BAC Information

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BAC

Clone NameMSMg01-342B20
Chromosome15 (Build37)
Map Location 79,036,623 - 79,037,056
singlet/doubletsinglet
Overlap geneLOC100041655
Upstream genePvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10
Downstream genePick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342B20.T7 (MSMg01no342_b20.b1)MSMg01-342B20.TJ (MSMg01no342_b20.g1)
ACCAG455744AG455745
length745730
length of high quality
(start - end)		369 (34 - 402)453 (67 - 519)
definitionCHROMAT_FILE: MSMg01no342_b20.b1 PHD_FILE: MSMg01no342_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:33 2005CHROMAT_FILE: MSMg01no342_b20.g1 PHD_FILE: MSMg01no342_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCCGCTATACGACTCCTATATCGAGAGGATCCGCGGAATTCTCTTTA
TTACTTATTTCTCCATAAAATTCATTTCCTTGCCAGGTGTGGTGGCGCAC
GCCTTTAATCCCGGCACTGGGGAGGCAGAGGCAGGGGGATTTCTGAGTTC
GAGGCCAGCCTGGTCTACAAAGTGAGCTCCAAGACAGCCAGAGCTATAAA
GAGAAACCCTGTCTCGAAAAACCAACAAAACAAAACAAAAAAAAAAACAA
AAATTCATTTCCTTGGGGAAAAGGCCACTGTGATGATCATATGTGATGGG
GAGATGGGAAAGACAGAAAACAGCGGCATGTGCTCTATGGAGGGAGGCAG
AACTGGAGACGTGGTGGTGATAGGGGAGAGAGAGGGTTAACCTGCCGTCA
TANCCCACCAAGGCGTGCAGGGTGCTGTGCAGCATCCTGGAGCTTGTGCT
TTTGTTTAATCTGGGCCCGGAATCTGGCACCTATTTTTGGTCCCGGGATG
ATCCTGGGCCCGTTCATTGGAGTAGGACCCGACCCTACCCACCCTTTTTT
TGTCTTGGCCCGCAACTTCCTGTAAGAGTCACCTGTTTTTTTTTTCCCTC
TCTACACCTTTCTTGTACCTGTTTCCTCCGCCTGGTTTCCTACTTTATTT
TTTTTCCTTATTTTGTGTGTCTTTCCCGTTATTATTTCTGCCCTCATAAA
CTACTCCGGCAGTGTTTATGTCTAACTCCTTCTCCTTATTTTTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGAGACAGCCAAAGCTACACAGAGAAATCCTGTC
TTGAGTAGGAGGGAGGGGGAACTAAAGGGCAGGAGAGATGGCTCAGCTTT
CTGTCTTTCCAGAGACCCCGAGGTCTGTTTTCAGCACCCACATGGGGCAT
CTCACTGCTGCCTGTAACTGCAGTCACACATTTCTGGCCTCTACGAATAC
CCCCTACAAACGCATAAATAAATAATAAAATAAATATTTTAAATTTTTAA
ACAAAAACAAAATCTATATGACAACAAAATACTATATTAAAAAAAAAAGA
TTCAAGTATCGTCCCTGATTGATAAATGAACCTAAGAGAGAGCAAGCATC
CTGGAGGCCATGTTGGAGCCATGCCCTTTAGACCAGGGCTTTTCCCAAGG
GATGAAGGAGGGGCAACACCAGATAACCTAAGGCCCACAGACACATCATC
ACGGGTAGGTTGAGGCGTGGGTGGCCTGGAGTCTGCGTGGAGAGTCTCTT
GTGGCTCTCCCTGTCACTGACAGNCATCAAGCACCTCACCTCCCATGCCT
ACATGCCCCACCCTTTGACTGGGGACTGTTTGGCTGATTTGTCCTACCAT
GGACTATAAGTAAAGTGGGGAAAAACCTTGTCTTTATCCTTGGGGGGCCC
ATTCACCCCCCCCCCAACCCTTTTTTAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_b20.g1 MSMg01no342_b20.g1 CHROMAT_FILE:
MSMg01no342_b20.g1 PHD_FILE: MSMg01no342_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:33 2005
         (453 letters)



>mm_chr15_79036205_79037056
          Length = 852

 Score =  810 bits (419), Expect = 0.0
 Identities = 431/435 (99%), Gaps = 1/435 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  acagagaaatcctgtcttgagtaggagggagggggaactaaagggcaggagagatggctc 78
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 852 acagagaaatcctgtcttgagtaagagggagggggaactaaagggcaggagagatggctc 793

                                                                       
Query: 79  agctttctgtctttccagagaccccgaggtctgttttcagcacccacatggggcatctca 138
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 792 agctttctgtctttccagagaccccaaggtctgttttcagcacccacatggggcatctca 733

                                                                       
Query: 139 ctgctgcctgtaactgcagtcacacatttctggcctctacgaataccccctacaaacgca 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctgctgcctgtaactgcagtcacacatttctggcctctacgaataccccctacaaacgca 673

                                                                       
Query: 199 taaataaataataaaataaatattttaaatttttaaacaaaaacaaaatctatatgacaa 258
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tacataaataataaaataaatattttaaatttttaaacaaaaacaaaatctatatgacaa 613

                                                                       
Query: 259 caaaatactatattaaaaaaaaaagattcaagtatcgtccctgattgataaatgaaccta 318
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 caaaatactatatt-aaaaaaaaagattcaagtatcgtccctgattgataaatgaaccta 554

                                                                       
Query: 319 agagagagcaagcatcctggaggccatgttggagccatgccctttagaccagggcttttc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agagagagcaagcatcctggaggccatgttggagccatgccctttagaccagggcttttc 494

                                                                       
Query: 379 ccaagggatgaaggaggggcaacaccagataacctaaggcccacagacacatcatcacgg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccaagggatgaaggaggggcaacaccagataacctaaggcccacagacacatcatcacgg 434

                          
Query: 439 gtaggttgaggcgtg 453
           |||||||||||||||
Sbjct: 433 gtaggttgaggcgtg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 852
Length adjustment: 10
Effective length of query: 443
Effective length of database: 842
Effective search space:   373006
Effective search space used:   373006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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