BAC Information

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BAC

Clone NameMSMg01-343F03
Chromosome15 (Build37)
Map Location 91,029,074 - 91,029,283
singlet/doubletsinglet
Overlap genenone
Upstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2
Downstream geneLOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F03.T7 (MSMg01no343_f03.b1)MSMg01-343F03.TJ (MSMg01no343_f03.g1)
ACCAG456659AG456660
length806815
length of high quality
(start - end)
68 (49 - 116)218 (72 - 289)
definitionCHROMAT_FILE: MSMg01no343_f03.b1 PHD_FILE: MSMg01no343_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:07 2005CHROMAT_FILE: MSMg01no343_f03.g1 PHD_FILE: MSMg01no343_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTGCCTCCGCTATACGACTCACTATATTCTCAGAGGATCCGCGGAAT
TCTCTGTTTATCTCTGCATCCTGATTTTAAATTAGGCTATTTAGGTCTTG
TTGTTGTTGTTTGTTTTGCTTTGCTTGTACAATCCATATATTCTACCCTA
CATATCTTTATATCCTTTTTATCAACCTTATTATAACTTCATATATCATT
CTCAACTATACAAACCACTTTCATCTCCACCATCCACCCACCTTTCCCTC
TCTCTTATTCCCCCTCCTCCTAACACAAAATTCATTCCACTCAATAAAAA
CACCTACCAAAAAAAATCAATACTATATATACAAACATTAAACCACCTTT
ACACTCCCCTACATACATAATACAATCATACCCCATTCCACACACCTCAC
CCATCCCACCACCCCTATTAACCAAAATCATCACTACAACCTACTCCACA
TATTTCTTCACCAACTATAATACTAAATATATAACCACAATACTACCTAC
CCCATACAACCCTTCTCTCTCACTCACACAAACCCAAATCCCCTAACTCC
ACCTATCATTAACTTCTAACAATATACCAAACCTACAACCAACCACTCCA
CAATCCCCAACATTTCCAACATACCATCATTCTATTCACTAATAATTAAA
TTAACACCTACACCACCCAACTCTCTACCTACACATCCACTATCAAATTC
ACCCACCTCAAAATAACCACCACAACAATAACACACTATTCTATTTATTC
TTTTACTCCCCCATCCAACCATTCTACCTCATTATTACAACCACACCCCC
GCCTAG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCTGTTATGATTCCATTACAGATAAAAT
GTGGTAGGGGTTGTTGTCGTTATAAAATTAGGATTAATGTTTTTAAATAA
GATGTATTTATTTTAGTTACTAGTTCTTCAAAACTTAGATAAATATTACA
TTTTGACAATTTTTTTTTTCTGGAAGAAATCATGGCAATTTGAAAACTTA
CTTTATTTGGAAAAAGGAACTTCATGTTTTTTTTTTGTTGTTGCTGGTTT
TTTGTTCCCTTCCACTTCTTCCACCTCTTCACTTTTTTTTCCCTTTTTCC
CTTCTTTTCTCCCTCTCTCTTTTCATTTCTCTCCTCTTTTCTCCTCTTTC
TTTTTTCTCTCTCTCCTTGTCCCCCCCCCTTTCTTTCCTTCTCTACCCTT
TCTTCGGCTCTCTCCTTTATTATTTCTCCTTTTCTCCCTTTTTTTTCTCT
TACTATCCTTCTTTTTTTTTTCCCCCCACCCTCATCTTTCTTTCTCCCCT
TTTTTTTTTCTCTCTCCTTCCCTTTGTCCCACTTTTCTCTTTTTTCTCTG
ACATTCTTTCTCTTCCATCTACTCCCCTACTCTTTTCTTTTTTTTTATTT
TTCTCTCCATTCTCCCTCCCCCTTCTTCTTCTCCTCCCTTCTCATTTTCC
TTCTTTATTTTCTTCCTTTTCCCCCCCATCTCTTCTTTTTTTTCTTTCTT
CCTCTCTCCCTCTCTTTCTTTCTTTTTTATTCCCACTCTCCATTCATCCC
TATTCTTATCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f03.g1 MSMg01no343_f03.g1 CHROMAT_FILE:
MSMg01no343_f03.g1 PHD_FILE: MSMg01no343_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:07 2005
         (218 letters)



>mm_chr15_91028874_91029490
          Length = 617

 Score =  400 bits (207), Expect = e-116
 Identities = 210/211 (99%), Gaps = 1/211 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgttatgattccattacagataaaatgtggtaggggttgttgtcgttataaaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgttatgattccattacagataaaatgtggtaggggttgttgtcgttataaaattag 260

                                                                       
Query: 61  gattaatgtttttaaataagatgtatttattttagttactagttcttcaaaacttagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattaatgtttttaaataagatgtatttattttagttactagttcttcaaaacttagata 320

                                                                       
Query: 121 aatattacattttgacaattttttttttctggaagaaatcatggcaatttgaaaacttac 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aatattacattttgacaattttttttt-ctggaagaaatcatggcaatttgaaaacttac 379

                                          
Query: 181 tttatttggaaaaaggaacttcatgtttttt 211
           |||||||||||||||||||||||||||||||
Sbjct: 380 tttatttggaaaaaggaacttcatgtttttt 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 617
Length adjustment: 9
Effective length of query: 209
Effective length of database: 608
Effective search space:   127072
Effective search space used:   127072
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)