BAC Information

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BAC

Clone NameMSMg01-343F24
Chromosome15 (Build37)
Map Location 67,070,654 - 67,248,170
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F24.T7 (MSMg01no343_f24.b1)MSMg01-343F24.TJ (MSMg01no343_f24.g1)
ACCAG456701AG456702
length785805
length of high quality
(start - end)		378 (35 - 412)304 (64 - 367)
definitionCHROMAT_FILE: MSMg01no343_f24.b1 PHD_FILE: MSMg01no343_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:11 2005CHROMAT_FILE: MSMg01no343_f24.g1 PHD_FILE: MSMg01no343_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,070,654 - 67,071,027)(67,247,870 - 67,248,170)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTATA
ATTTCCCTCAAAAAAATTGAATTGTTAAAGGATTGACTGTAGTTTATTCA
TTCCCAAAGACATGATTTTCTCAAAAACATAATGTGTTCAGAAGCCGAGC
TTATTAATATCTTTTCACCCACCTGTGTTGTTCTGGTTGCAGGAGTATAG
AAAATTGGTGTCAACAATTCAATGGGTCTTGAGCCAACATTGACCCAGAA
TAAGATGGCACAGTTGGTTGCAGAGATAGGGCCCCAACTAGAGTCCAGTA
AAGACAGAGTTAGAAAGGGTTACTATATTCAGATGGCTTAATTGACTGTG
TCTTTAAGGATCAGAAGTGAAGAAATGGGAAGAAAAGGCAATGTGAGGCT
GTGTTAGGAGGATGCCGCTGTGTACAGTCAGTCCACATCCAGTGAGGGCT
ACCTGGGATGAACATTGGACCTTGCTTANGAATCTCCACCAGGAATGACC
AAAAAGCCCATAACTCCCCTTTCCTTTCCCTCCCTTTTTTCTGGAGGAAA
ACTTGAGTGTTCTCCCTAATTCTATATGGCCCCTTATTTTATGGAAACGG
TTTTGAAAAATTATCCCTAACAGGTGCCCTTTTCTGGCCCAAGTTAATAT
CTCTGTGGTTCTCACTTTTCCTGCAATATCCAATTTTTATATCCACTCGC
CTCCGCTGTAACTCTCTCTTCTCCTTCCTAATTCCTTGTTTTGATATATC
TAATTTCTTTCCTCCTTCTTTTTTCTATCTTTTCN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGTGCTGGGTTCTAGATTCAAAAAGAAGGCCAGGATG
AACAGGGGTCACACATCAGAAGATCTAGTGGTGGTACAGTCCCCATCTGA
GAGCCCAGGTCTGTTCCTGGGGCACACAGGAGCTAGAATACAAAGAGGTA
GGAGACAGGAGGGAGAAACAAATTATTAAACATAACAATTTTCTTCATTT
CTACATCTTTTAACTCCCCAGTGCAAGATATCACAGTGAGAGTATGGTAG
GCAGAATTTCTGAGAGCCTTTTTACCTTTGAATGGATAAGTGTTCTCAGA
CCTTTTCTTCTGAGTCCAAGCTTCTACTTGCTGGACCCCAGGACTTGTTT
GTCACCACCCTAAAATTTTCTTTTGTGTGGCTGAACTTTCGACCTTATGA
ATTTCTTCTGTCTACTTGTGTCTACGTTTGTTCACCAACATTATAGGCCA
TTTTGGCCTTTTGTCTTTTTTTTGTCCCCTCTCCTTTTACTGTTCTGGAT
TCTTTTTTTCCCCTCATTATTCTTTTGCTCTGTTTTTTTTTTTTATTGTC
TCTTTTCCTCCTTTTTTTTTTTCTCTCTTTTTCTCTCTACTTCTTCTTTT
TATTTTCGCATCATCGTTTCTTTCATCTTCTTTTTCATCTTATTTTATCG
TTTGTTCTCCTTACTCTTTTTCCGCCTTCATTTGTCTCTTATCCTTATTC
ACTGTTTTTGTTCTCTTTTTTTTTTCCTTCCTCCTTCTATCCTCAACCTT
TCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f24.b1 MSMg01no343_f24.b1 CHROMAT_FILE:
MSMg01no343_f24.b1 PHD_FILE: MSMg01no343_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:11 2005
         (378 letters)



>mm_chr15_67070450_67071227
          Length = 778

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattataatttccctcaaaaaaattgaattgttaaaggattgactgtagtttatt 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcattataatttccctcaaaaaaattgaattggtaaaggattgactgtagtttatt 264

                                                                       
Query: 65  cattcccaaagacatgattttctcaaaaacataatgtgttcagaagccgagcttattaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattcccaaagacatgattttctcaaaaacataatgtgttcagaagccgagcttattaat 324

                                                                       
Query: 125 atcttttcacccacctgtgttgttctggttgcaggagtatagaaaattggtgtcaacaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcttttcacccacctgtgttgttctggttgcaggagtatagaaaattggtgtcaacaat 384

                                                                       
Query: 185 tcaatgggtcttgagccaacattgacccagaataagatggcacagttggttgcagagata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 tcaatgggtcttgagccaacattgacccagaataagatggcacagttggttgcagcgata 444

                                                                       
Query: 245 gggccccaactagagtccagtaaagacagagttagaaagggttactatattcagatggct 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggccccaactagagtccagtgaagacagagttagaaagggttactatattcagatggct 504

                                                                       
Query: 305 taattgactgtgtctttaaggatcagaagtgaagaaatgggaagaaaaggcaatgtgagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taattgactgtgtctttaaggatcagaagtgaagaaatgggaagaaaaggcaatgtgagg 564

                         
Query: 365 ctgtgttaggagga 378
           ||||||||||||||
Sbjct: 565 ctgtgttaggagga 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_f24.g1 MSMg01no343_f24.g1 CHROMAT_FILE:
MSMg01no343_f24.g1 PHD_FILE: MSMg01no343_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:11 2005
         (304 letters)



>mm_chr15_67247670_67248373
          Length = 704

 Score =  582 bits (301), Expect = e-171
 Identities = 301/301 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgctgggttctagattcaaaaagaaggccaggatgaacaggggtcacacatcagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtgctgggttctagattcaaaaagaaggccaggatgaacaggggtcacacatcagaaga 442

                                                                       
Query: 61  tctagtggtggtacagtccccatctgagagcccaggtctgttcctggggcacacaggagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagtggtggtacagtccccatctgagagcccaggtctgttcctggggcacacaggagc 382

                                                                       
Query: 121 tagaatacaaagaggtaggagacaggagggagaaacaaattattaaacataacaattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaatacaaagaggtaggagacaggagggagaaacaaattattaaacataacaattttc 322

                                                                       
Query: 181 ttcatttctacatcttttaactccccagtgcaagatatcacagtgagagtatggtaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatttctacatcttttaactccccagtgcaagatatcacagtgagagtatggtaggca 262

                                                                       
Query: 241 gaatttctgagagcctttttacctttgaatggataagtgttctcagaccttttcttctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatttctgagagcctttttacctttgaatggataagtgttctcagaccttttcttctga 202

            
Query: 301 g 301
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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