BAC Information

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BAC

Clone NameMSMg01-343N19
Chromosome15 (Build37)
Map Location 12,124,475 - 12,124,814
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts12, Tars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052
Downstream geneLOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343N19.T7 (MSMg01no343_n19.b1)MSMg01-343N19.TJ (MSMg01no343_n19.g1)
ACCAG457066AG457067
length774789
length of high quality
(start - end)		379 (29 - 407)338 (62 - 399)
definitionCHROMAT_FILE: MSMg01no343_n19.b1 PHD_FILE: MSMg01no343_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:51 2005CHROMAT_FILE: MSMg01no343_n19.g1 PHD_FILE: MSMg01no343_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATATTTCGAGGATCCGCGGAATTCTCTCTCAGTC
TTTGACATTTTGCTCTGCTTGGCCTGAAACCAACTCTGGAGATCTGCTCT
AATCTTCTGGCTCCTTTTCATTCTCTGGTTTATTCTCCAACCTGACTCTG
TACAACGGACCCGGAAAAGCTGCCTCCTTTCTCTCCTTCTCTTTCTCTGT
GCTGCTCTCTCTCTCTCTCTCTTTCTTTTTTTAATTTTTTTAAAGATTTA
TTTATTTATTATCAGTAAGTACACTGTAGCTGTCTTCAGACACCCCTGAA
GAGGGCATCAGATCTCATTACAGGTGGTTGTGAGCCACCTGAGCCATCTC
ACCAGCCCTGTGCTGCTCTGTCTTAAGTCGCCTCTCATTTCTTCCTCTTC
TCCTGACAGCTGGGTACATCCTATTCTGTCAAATCTCTCTCTCTGATTTG
TCACTTTGTCTGCCACTCAATTATACATCACTTTTCTACATGATGCTTCC
TTATACACTCTAAGTTTACCTCCATTGTTTGTGATTATAGGTGTACTTAT
TGGCTTGTCTGTATCTCTCCTTCTTCAAACATCTGACCTTGTGTGTCTCA
TGTTGAATTCTAATCTCCACTAGCAATTAAGTTCTTTTCCTACGTCCAAA
CTACCCACTTATTGACTTCTCATTTGGTATCCACATTTATCTCTATCAAT
TTTTTATTTATCTCCATTTCATCAAATTTTTTTTTATTTATTAATTTTTT
CCTCTCCACCTTTACCACCTCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAAGACTTTGCATCTGTTTCAGCGACGGTCACCAGGAAGG
AGGAGGGGGCTTACTGCTGTCTCAAATGATGAAGAGTCACACAATATAAT
GCTTGTATATGTCATCCAATCACGTGACTGCTGTGCACCACAAAATAAAA
GCAACACGCATCTGATGCCAAAGTTGTACCATGGGCCAGAGAAAAGCGAG
GGACCAGCTGTCCAGCTGTCTCTTCTCTGCTTTGACAGAGCTGACACCCA
GAGAACCTGTTTCCTCTCCCATGCTTTGTTTGAGGCTAGATAAGCGGAGG
CGTGAGAGTGTCCAGGAGCGGTGGAGGGAGGGGCTGGGGTTTGGAGTTTN
NNGGNNCNNNNNNNNNNNTGNNNNNTGTNNTTTNNGGTGTTTTTTTTTTN
NNGNTNTGTGNTTTTGNGTNGGTTNGGNTTTTTNGTNGTTTGTGGGNGTT
GTTTTTTTGTTTTTTTTGNTTTTTTTTTTGTTCTTTTTTTTTTTTTGTTT
TTTTTTTTTTTGNTGTTGNTTTTTTTTGGTTTTTGTTGTTGTGTTTGTGT
GTTNTTTTTTTTTGTTTTTTTTTTTTGTTTTTGTTTTTTTTTGGTTGTTT
TTTTTNTTTTTGTTTTTTTTTGNGTGTTTTGTTTTTTTTTTTTTTGGTTT
GTTTGGTTTGTGTGTTTTTTTTTTTGTTTTGTTTGTTTTGTTTGTTTTGT
TGTTTTTTGGGTGTTTGTTTTGTTGTGTTNTTTNTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_n19.g1 MSMg01no343_n19.g1 CHROMAT_FILE:
MSMg01no343_n19.g1 PHD_FILE: MSMg01no343_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:51 2005
         (338 letters)



>mm_chr15_12124275_12125014
          Length = 740

 Score =  592 bits (306), Expect = e-173
 Identities = 331/340 (97%), Gaps = 2/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagactttgcatctgtttcagcgacggtcaccaggaaggaggagggggcttactgctgtc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 540 aagactttgcatctgtttcagcgacggtcaccaggaaggagaagggggcttactgctgtc 481

                                                                       
Query: 61  tcaaatgatgaagagtcacacaatataatgcttgtatatgtcatccaatcacgtgactgc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 480 tcaaatgatgaagagtcacacaatataatgcttgtatatgccatccaatcacgtgactgc 421

                                                                       
Query: 121 tgtgcaccacaaaataaaagcaacacgcatctgatgccaaagttgtaccatgggccagag 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 420 tgtgcaccacaaaataaaagcaacacgtatctgatgccaaagttgtaccatgggccagag 361

                                                                       
Query: 181 aaaagcgagggaccagctgtccagctgtctcttctctgctttgacagag--ctgacaccc 238
           |||||| |||||||||| |||||||||||||||||||||||||||||||  | |||||||
Sbjct: 360 aaaagcaagggaccagccgtccagctgtctcttctctgctttgacagagccccgacaccc 301

                                                                       
Query: 239 agagaacctgtttcctctcccatgctttgtttgaggctagataagcggaggcgtgagagt 298
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agagaacctgtttcctctcccttgctttgtttgaggctagataagcggaggcgtgagagt 241

                                                   
Query: 299 gtccaggagcggtggagggaggggctggggtttggagttt 338
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtccaggagcggtggagggaggggctggggtttggagttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 740
Length adjustment: 9
Effective length of query: 329
Effective length of database: 731
Effective search space:   240499
Effective search space used:   240499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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