BAC Information

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BAC

Clone NameMSMg01-344B20
Chromosome15 (Build37)
Map Location 49,240,272 - 49,240,664
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344B20.T7 (MSMg01no344_b20.b1)MSMg01-344B20.TJ (MSMg01no344_b20.g1)
ACCAG457257AG457258
length768746
length of high quality
(start - end)
394 (75 - 468)511 (71 - 581)
definitionCHROMAT_FILE: MSMg01no344_b20.b1 PHD_FILE: MSMg01no344_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:12 2005CHROMAT_FILE: MSMg01no344_b20.g1 PHD_FILE: MSMg01no344_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGATCTCTCTCCNNAAAAAAAAAAAAAAAAGACAAAATGA
CTGAAGTGTTCTAAGAGGATAGAACAACAGGATTTCACAGAGAGTACCAC
ACACACACATGTTATTAGAGTATGTGATGTCTGAGAAAGTGTGTTAACTT
AGTTTTTACTAATTAAAAAGTATTTAGCTATTTTTAGGTAAATCACAATA
GTGTCCATTTCTATGAGAGTTATTTTAACTGAAAATAATTTTGTCTATGA
TTCAGTGACCATTGTTCATTGTAAATTTTTCCCCCCTTTGGTTTTTCGAG
ACAGGGTTTCTCTGTATAGCCCTGGCTGTCCCAGAACTAACTCTGTAGAC
CAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCACTTGGTGC
ATGCCTTTAATCCTTTANCTGNNATTAAANNNATGNNNCNCTACTGCCTG
NCTCATAAATAACATTTACCTTAATAATTAATCTTTATTCATTTTTCATT
AATAACACATTTCTAAATTCTTTAAACCTTTTTTTTTCAATATTAATTTT
CAAATTTTAATAATCTTTATAATCTCCCACCAAATTTTTATTTTATTTCT
TAATATACATATCTTATATTTTTTCCTTCTTTACTTATATTTCCCCTCTT
TTCTTTAATTTACTTTTTTACCCTATTTCTTTTCCATCCTCTCTTCCTTT
TCCTTCTTCTTTATTATT
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGCACTCACTGATAAGTGGAT
ATAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAACT
CCTGGAATTCCCGAAAAAGGAAAAATGAGGTGTGGACACCATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_b20.b1 MSMg01no344_b20.b1 CHROMAT_FILE:
MSMg01no344_b20.b1 PHD_FILE: MSMg01no344_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:12 2005
         (394 letters)



>mm_chr15_49240203_49240996
          Length = 794

 Score =  752 bits (389), Expect = 0.0
 Identities = 392/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaaaaaaaaaaaagacaaaatgactgaagtgttctaagaggatagaacaacaggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaaaaaaaaaaaaaaagacaaaatgactgaagtgttctaagaggatagaacaacaggatt 403

                                                                       
Query: 61  tcacagagagtaccacacacacacatgttattagagtatgtgatgtctgagaaagtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcacagagagtaccacacacacacatgttattagagtatgtgatgtctgagaaagtgtgt 343

                                                                       
Query: 121 taacttagtttttactaattaaaaagtatttagctatttttaggtaaatcacaatagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 taacttagtttttactaattaaaaagtatttagctatttttaggtaaatcacaatagtgt 283

                                                                       
Query: 181 ccatttctatgagagttattttaactgaaaataattttgtctatgattcagtgaccattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccatttctatgagagttattttaactgaaaataattttgtctatgattcagtgaccattg 223

                                                                       
Query: 241 ttcattgtaaatttttcccccctttggtttttcgagacagggtttctctgtatagccctg 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 222 ttcattgtaaatttttcccccctttggtttttcgagacagggtttgtctgtatagccctg 163

                                                                       
Query: 301 gctgtcccagaactaactctgtagaccaggctggccttgaactcagaaatccacctgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gctgtcccagaactaactctgtagaccaggctggccttgaactcagaaatccacctgcct 103

                                            
Query: 361 ctgcctcacttggtgcatgcctttaatccttta 393
           |||||||||||||||||||||||||||||||||
Sbjct: 102 ctgcctcacttggtgcatgcctttaatccttta 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)