BAC Information

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BAC

Clone NameMSMg01-345C22
Chromosome15 (Build37)
Map Location 68,929,370 - 69,076,101
singlet/doubletdoublet
Overlap genenone
Upstream geneZfat1, LOC100041000, EG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345C22.T7 (MSMg01no345_c22.b1)MSMg01-345C22.TJ (MSMg01no345_c22.g1)
ACCAG458066AG458067
length759787
length of high quality
(start - end)		468 (59 - 526)415 (86 - 500)
definitionCHROMAT_FILE: MSMg01no345_c22.b1 PHD_FILE: MSMg01no345_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:35 2005CHROMAT_FILE: MSMg01no345_c22.g1 PHD_FILE: MSMg01no345_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,075,688 - 69,076,101)(68,929,370 - 68,929,784)
sequence
NNNNNNNNNNNNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTCTCTGAAAAGGTAGCACCCTTACATGGGCT
AGAGTCTTGGGCTGAATCAAATGGGAAAAAAGGAAAAAACAAACAAACAA
AGGACAACACAACAGCCCTTTCTCTGCTTCCTGTGCTCAGACCCACATTG
CTGTCATCACAGCCATAATCTGTTCCCACCATCCTGCCATATGACCATGT
TTGATGGTTCCATCACCGAAAACAAAAGCATCCTCACTTAAATATCTTTT
TGTCAGGGATCTGCACATAGCTTCATGTAACTTAGACACCTCAGGGATGA
GGATCCCACCTAGCAGGCAACAGTATAGTCAGCAAATGATTTCGTCATAC
CTTAACTGAAACAAGACCCTTAGCAGGTTTGTCAAGACCTTTTATTTCCA
CATGTTTTCCCTGATTTCCAACAGGTCTTTCTCTCACTTATTCAACACAA
ACACAGTCTTCTTCATTTTCTCAGTAAATCAGCAACCCTGTCCTTTCTCC
CTGCATGAGCCAAAGCATTGATTATTGCCTCTCTTTACATTCTGAAACTG
AAATCTACCCCAGCCTCTAACTCTGTTTGGTTTTATATATGGCACAAAAT
TTCAAGGGGGAAAAAAAGAAAAAAAACTGTTAAGAAAAACTGGGGAAAAA
CCCCCCCAAAAAAATTGATTTCCCAGAAAGGTGGAAAACATTAAAAAAAT
TTTAAAAAC

NCCCCTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAGTTCTTCC
AGTTAGTGCTCGGCTGTGTGTCTTGCTGCTGTTTCTGCCTCTGCCTGCAG
ATGGGGTTACTCCTCTCCTGCCCACTGCACGGAAGCCTCACTGTTGTTCC
ACAGACACCTCACTCCTTGTGACCCCTTCCTGTCTGTCCGCTATCTCCCA
GATACCACGTTCCCTTGCCCCATTGGTCCAGCTCATAATCTAGCACTTGC
CTATCAATTCCAGTAAGACTTGAAGCACAACACACACACAGGAAAAGGAA
ACCTTCTTCCCTGGCCAAAATCTCTGTACCCAGTCACCACTCAGAAGACC
CTTGAAACGTTCTGAATTCTGACAAATGCTCTGTGACTAGGTATTTGACC
TTCTTTCCACCGTCAAAATAATAAACATCTGTGGTACAGTGCATGGTAGA
TTGAAGGAATGCGGGAGCTTTGTATCAGATAGGAAAAAAAAATGTACCAC
GATTTCCTTTGGGCTTCTTTTTCAACTTTTGTAACAGATTTGGAAAATGG
GGTGTGTGGGTTTTTCGCCCACACCTAATTCATACATTCTCTTCACATCT
TTTCTTTCTACATTATTTTTCCCTCACCTTCTCCATATCTCCTATTCCCT
CCATCTTATTCACACTATATTCTACAATTTTTTCCTATTATCTTAATTTC
ACTATATTTTATCACCTCATTTTTCTTTTTTTACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_c22.b1 MSMg01no345_c22.b1 CHROMAT_FILE:
MSMg01no345_c22.b1 PHD_FILE: MSMg01no345_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:35 2005
         (468 letters)



>mm_chr15_69075234_69076101
          Length = 868

 Score =  762 bits (394), Expect = 0.0
 Identities = 409/414 (98%)
 Strand = Plus / Minus

                                                                       
Query: 55  tgaatcaaatgggaaaaaaggaaaaaacaaacaaacaaaggacaacacaacagccctttc 114
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tgaatcaaaggggaaaaaaggaaaaaacaaacaaacaaaggacaacacaacagccctttc 809

                                                                       
Query: 115 tctgcttcctgtgctcagacccacattgctgtcatcacagccataatctgttcccaccat 174
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 808 tctgcttcctgtgctcagacccacattgctgccatcacagccataatctgttcccaccat 749

                                                                       
Query: 175 cctgccatatgaccatgtttgatggttccatcaccgaaaacaaaagcatcctcacttaaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cctgccatatgaccatgtttgatggttccatcaccgaaaacaaaagcatcctcacttaaa 689

                                                                       
Query: 235 tatctttttgtcagggatctgcacatagcttcatgtaacttagacacctcagggatgagg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tatctttttgtcagggatctgcacatagcttcatgtaacttagacacctcagggatgagg 629

                                                                       
Query: 295 atcccacctagcaggcaacagtatagtcagcaaatgatttcgtcataccttaactgaaac 354
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 628 atcccacctagcaggcaacagtatagtcagcaaatgatttcatcataccttaactgaaac 569

                                                                       
Query: 355 aagacccttagcaggtttgtcaagaccttttatttccacatgttttccctgatttccaac 414
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaggcccttagcaggtttgtcaagaccttttatttccacatgttttccctgatttccaac 509

                                                                 
Query: 415 aggtctttctctcacttattcaacacaaacacagtcttcttcattttctcagta 468
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 aggtctttctctcacttattcgacacaaacacagtcttcttcattttctcagta 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_c22.g1 MSMg01no345_c22.g1 CHROMAT_FILE:
MSMg01no345_c22.g1 PHD_FILE: MSMg01no345_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:35 2005
         (415 letters)



>mm_chr15_68929170_68929984
          Length = 815

 Score =  772 bits (399), Expect = 0.0
 Identities = 411/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttcagttcttccagttagtgctcggctgtgtgtcttgctgctgtttctgcctctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttcagttcttccagttagtgctcggctgtgtgtcttgctgctgtttctgcctctgcc 260

                                                                       
Query: 61  tgcagatggggttactcctctcctgcccactgcacggaagcctcactgttgttccacaga 120
           ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tgcagatggggttgctcctcgcctgcccactgcgcggaagcctcactgttgttccacaga 320

                                                                       
Query: 121 cacctcactccttgtgaccccttcctgtctgtccgctatctcccagataccacgttccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacctcactccttgtgaccccttcctgtctgtccgctatctcccagataccacgttccct 380

                                                                       
Query: 181 tgccccattggtccagctcataatctagcacttgcctatcaattccagtaagacttgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccccattggtccagctcataatctagcacttgcctatcaattccagtaagacttgaag 440

                                                                       
Query: 241 cacaacacacacacaggaaaaggaaaccttcttccctggccaaaatctctgtacccagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaacacacacacaggaaaaggaaaccttcttccctggccaaaatctctgtacccagtc 500

                                                                       
Query: 301 accactcagaagacccttgaaacgttctgaattctgacaaatgctctgtgactaggtatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accactcagaagacccttgaaacgttctgaattctgacaaatgctctgtgactaggtatt 560

                                                                  
Query: 361 tgaccttctttccaccgtcaaaataataaacatctgtggtacagtgcatggtaga 415
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 tgaccttctttccaccgtcaaaataataaacatctgtggtacaatgcatggtaga 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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