Query= MSMg01no346_g14.b1 MSMg01no346_g14.b1 CHROMAT_FILE:
MSMg01no346_g14.b1 PHD_FILE: MSMg01no346_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:06 2005
(495 letters)
>mm_chr15_100213652_100214547
Length = 896
Score = 888 bits (459), Expect = 0.0
Identities = 488/507 (96%), Gaps = 17/507 (3%)
Strand = Plus / Minus
Query: 5 gaattcctttttctcgatgctagcactgaaggagccggccgtccttgcttccagcttctg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaattcctttttct-gatgctagcactgaaggagccggccgtccttgcttccagcttctg 575
Query: 65 gctttactttttgggtacattgaagaaccgaggtctgatatagtccttatacatagagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gctttactttttgggtacattgaagaaccgaggtctgatatagtccttatacatagagta 515
Query: 125 gagaacacctggagaagaaagtcacccacaatcagtagtgtccgtgagaagcaaacactg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gagaacacctggagaagaaagtcacccacaatcagtagtgtccgtgagaagcaaacactg 455
Query: 185 acattttcccacacgcttttccaaaacgagcacactattgcaaaagaaaaggacaaacaa 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acattttcccacacacttttccaaaacgagcacactattgcaaaagaaaaggacaaacaa 395
Query: 245 aactcagtaagcaaggctccgctcacccagcggttgcagaatcaaataacacttaagtat 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 394 aactcagtaagcaaggctccgctcacccagcggctgcagaatcaaataacacttaagtat 335
Query: 305 tttggatcagcatcgacgcaggcatatgcacatgtgcacacacaaacccaaactcataaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttggatcagcatcgacgcaggcatatgcacatgtgcacacacaaacccaaactcataaa 275
Query: 365 aacacaaattctgt--aaaaaaacataaatttaaaagacaataatactttgaacttaagc 422
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aacacaaattctgtaaaaaaaaacataaatttaaaagacaataatactttgaacttaagc 215
Query: 423 tgtcataac--------------aaagtttttgttttgtttgttttcttgagtcaagtgt 468
||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 214 tgtcataacaccatccccaaattaaagtttttgttttgtttgttttcttgagtcaagtgt 155
Query: 469 ttctctgtgtagccctgaatgtcctag 495
|||||||||||||||||||||||||||
Sbjct: 154 ttctctgtgtagccctgaatgtcctag 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space: 429710
Effective search space used: 429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_g14.g1 MSMg01no346_g14.g1 CHROMAT_FILE:
MSMg01no346_g14.g1 PHD_FILE: MSMg01no346_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:06 2005
(507 letters)
>mm_chr15_100041857_100042763
Length = 907
Score = 893 bits (462), Expect = 0.0
Identities = 503/532 (94%), Gaps = 25/532 (4%)
Strand = Plus / Plus
Query: 1 atgagttcaaggccagcctggtctacagagtaagttccaggacagccagagctacacata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 176 atgagttcaaggccagcctggtctacagagtaagttccaggacagccagagctacacaga 235
Query: 61 g-aaaccctgtgtcagaaaagaaaaaaaaagacaaaaatgtgtgtttacatgtgcaaatg 119
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 236 ggaaaccctgtgtcagaaaagaaaaaaaaagacaaaaatgtgtgtttacgtgtgcaaatg 295
Query: 120 tgtgtttacaggctgtgttgccatctctccttccacctttgtctaggttcacctaccaag 179
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 296 tgtgattacaggctgtgttgccatctctccttccacctttgtctaggttcacctacgaag 355
Query: 180 ccatcctcaatccagactcagtgatgtgtccctcatagcaaacatttatcctgacctctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccatcctcaatccagactcagtgatgtgtccctcatagcaaacatttatcctgacctctc 415
Query: 240 tctcatggagcaagtagcagggctcaggaccttttggagtttgcccagtcacagccagct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tctcatggagcaagtagcagggctcaggaccttttggagtttgcccagtcacagccagct 475
Query: 300 ------------------------cttaatgccaacaccttattgaacgtgtgggggtct 335
||||||||||||||||||||||||||||||||||||
Sbjct: 476 gactggtgtccccaaccccgtgctcttaatgccaacaccttattgaacgtgtgggggtct 535
Query: 336 gagcctgttcctcttcctttcagaacgccatgacgccttgtatgtggtgggtgcgctgga 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gagcctgttcctcttcctttcagaacgccatgacgccttgtatgtggtgggtgcgctgga 595
Query: 396 tgagacactggagctgaggggattgcgataccatcctatcgatatagagacctccgtgtc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgagacactggagctgaggggattgcgataccatcctatcgatatagagacctccgtgtc 655
Query: 456 ccgcgtccacaggagcattgctgaatggtaagttcccttacaacttgttctc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccgcgtccacaggagcattgctgaatggtaagttcccttacaacttgttctc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
