Query= MSMg01no347_d22.b1 MSMg01no347_d22.b1 CHROMAT_FILE:
MSMg01no347_d22.b1 PHD_FILE: MSMg01no347_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:09 2005
(261 letters)
>mm_chr15_78755206_78755866
Length = 661
Score = 474 bits (245), Expect = e-138
Identities = 254/257 (98%)
Strand = Plus / Plus
Query: 5 gaattcctaatccttctgcttcattttcccaagtgctggtgttacaggcatgagccacca 64
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaatcctcctgcctcattttcccaagtgctggtgttacaggcatgagccacca 264
Query: 65 tgtagtttaagcttaaatattgaaagaatcagcacagataacaagaggtatgcatacctg 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtagtttaagtttaaatattgaaagaatcagcacagataacaagaggtatgcatacctg 324
Query: 125 ggctgactgactggctctgtacgatggcttaaagaagtcatattgcttaaggggatgtgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggctgactgactggctctgtacgatggcttaaagaagtcatattgcttaaggggatgtgt 384
Query: 185 aagttctagggagagggtcactccttctcccgggtgtgcagttacctcaggaacactccg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagttctagggagagggtcactccttctcccgggtgtgcagttacctcaggaacactccg 444
Query: 245 gtgggggaggggttgtc 261
|||||||||||||||||
Sbjct: 445 gtgggggaggggttgtc 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space: 164304
Effective search space used: 164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no347_d22.g1 MSMg01no347_d22.g1 CHROMAT_FILE:
MSMg01no347_d22.g1 PHD_FILE: MSMg01no347_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:09 2005
(473 letters)
>mm_chr15_78933637_78934509
Length = 873
Score = 772 bits (399), Expect = 0.0
Identities = 448/473 (94%), Gaps = 15/473 (3%)
Strand = Plus / Minus
Query: 1 caggctacctgtggctatactgtgagaccttgtctaaaaattaaaaccctaacaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 caggctacctgtggctatactgtgagaccttgtctaaaaattaaaaccctaacaaacaaa 694
Query: 61 ccaaaaacaaaaaaaacaaacaaacaaaaaaaaataaaaacactattgctacccaggcgc 120
| |||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 693 c------------aaacaaacaaac---aaaaaacaaaaacactattgctacccaggcgc 649
Query: 121 ctctggtctctgaacctagccacatgatgatgcagctgctcagaggcccatggttcttcc 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 648 ctctggtctctgaacctagccacatgatgatgcagccactcagaggcccatggttcttcc 589
Query: 181 atcttagagccaaaggtagatttgtatgttgtgttcctaggtataggaataggtacatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atcttagagccaaaggtagatttgtatgttgtgttcctaggtataggaataggtacatgt 529
Query: 241 ctggcacagccatataccaactgctctcttggctgtgacttcctgggagaccttggatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctggcacagccatataccaactgctctcttggctgtgacttcctgggagaccttggatga 469
Query: 301 aatatcacctgtgtaaggctggacgtcagcttgtgtaaaagggaaagacactccaccagt 360
||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 468 aatgtcacctgtgtaaggctggacatcagcttgtgtaaaagggaaggacactccaccagt 409
Query: 361 gagacagcaggcggacttctaggaccgacttccaaatgtgataccccaggcgctcctgtg 420
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 408 gagacagcaggcggacttctaggactgacttccaaatgtgataccccaggcgctcccgtg 349
Query: 421 cgaacactgatcgtcactactcgctaaagcaaagctctggaaaggagctgatt 473
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 348 tgaacactgatcgtcactactggctaaagcaaagctctggaaaggagctgatt 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
