BAC Information

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BAC

Clone NameMSMg01-347H03
Chromosome15 (Build37)
Map Location 102,641,886 - 102,642,300
singlet/doubletsinglet
Overlap geneLOC100043050
Upstream geneKrt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347H03.T7 (MSMg01no347_h03.b1)MSMg01-347H03.TJ (MSMg01no347_h03.g1)
ACCAG459785AG459786
length756791
length of high quality
(start - end)		419 (50 - 468)443 (74 - 516)
definitionCHROMAT_FILE: MSMg01no347_h03.b1 PHD_FILE: MSMg01no347_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:25 2005CHROMAT_FILE: MSMg01no347_h03.g1 PHD_FILE: MSMg01no347_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCATACCAAGCAAGGCAACTGATTATCCCTGCAAGAGC
CAGGAGCTCCCTTGGGGTACAGAGGGTGCTAGATGCCCTGATCATTTAGA
GTAATTGCTGTCGCCACTACCCTGATGGTAATAACCCCAGAACCACTGAC
AGCCCTTTTCATCTGAAAGATCTCAAAGCACTCAGCCGCCAAGTGCTTAT
TAAGCCCTCTTGGATGAGGTTGGCTCAACGGGTGTAGGCCCTTCCTACAG
ACGGTCAAGGTCAGAGGGTGACTCAGAGATCCCAAGGAGCCAAATGTTGC
AGGGGTGGGGGGCATAAGCTTCCTACACGTGGGAAAATGAGCCTCCTTGG
CCCAGGACTGGGTCTGGACTCTGAGGGAGTGGAAAGGAGGCAAACCCCTC
CCTGTACTGTCTACAAGCAGGGTCATGTAGAATTAATCCAACATGAAGTT
CATTTCCCCCAAATACCAGACAGGACTGTTTACAGTCCAAGAACTGGCAG
AACACATGGCGAACTGCGCTTGGGCAGTGTGATTTTGGTATGTCCGTATA
CATTTAACGAAAATCTCTTCTCTTATAGGCTGTGACCGACGTTTTTTTCG
TCCCCCCTTGGTATCCGTCTGAGCCCTGGNCCNCCXXXXXXXXXXXXXXX
XXXXCATTATTATCCCTTTTCTATATTTTATTTCCCTTTTCCCCTTTCAT
TTTCTC

ATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAATGTCCACTTAAAAAGGTTTATAC
CAGTTTTTAGGAATTAGACAGTTATCTCAGATAAAACAAAGTGTGTGATG
GATTAAATGTATGGTACCGTAAGGTCAAATAGGACATTTAAGACCTTATG
TGGCTGACATAGCAATACATTTATGGGAATGAGATTTATCACAGCAGTGG
GAAACTCAGATGAATATTCTCTCAATACCAGAGACAGTCCCTAAAATAAA
GGATGAAATGGAAGATGCTTCTGGGGAAGGTTTTGAAAAACATCATTCAG
AACAACCACAGACTATGCAGGCTGTCCAAAAACAGGATACAATAGGGACT
GAGTTTCCACACTTATAAGGAGGACCACTGCTGAAATGGCCTCACCCTTA
AAATGGTTGACTAAAAAGCCTGTGTAGGTAGATCAGTGGCCCTTAACTAA
GAAAAAATTGCAGGCTCTTGCACAACTGGTACAGGAGGAGATGAGGGCTC
ATCTAATAGAAGACCCTACCAGCCCATGGAATTCCCCTGTACTTTTTGTA
CCAAAGAACTGGGTGATTTGCATAAAGCCTCCCGATTTAATATTTTTGTA
TCCCCTTCATTTTTTTTTTTTATCTTTTTACCCTTTTGTTATTCCCTTTT
CCCCCTTCTCAATTTGCCTTTTTTCCCCCTTTTTTTCTCCATTTTTTCTC
ACTTTTCCCTCTTTACCCCCCCTCCCCTTTACTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_h03.b1 MSMg01no347_h03.b1 CHROMAT_FILE:
MSMg01no347_h03.b1 PHD_FILE: MSMg01no347_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:25 2005
         (419 letters)



>mm_chr15_102641682_102642500
          Length = 819

 Score =  772 bits (399), Expect = 0.0
 Identities = 411/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggcataccaagcaaggcaactgattatccctgcaagagccaggagctccctt 64
           |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 gaattcaaggcagacaaagcaaggcaactgatcatccctgcaagagccaggagctccctt 560

                                                                       
Query: 65  ggggtacagagggtgctagatgccctgatcatttagagtaattgctgtcgccactaccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggggtacagagggtgctagatgccctgatcatttagagtaattgctgtcgccactaccct 500

                                                                       
Query: 125 gatggtaataaccccagaaccactgacagcccttttcatctgaaagatctcaaagcactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gatggtaataaccccagaaccactgacagcccttttcatctgaaagatctcaaagcactc 440

                                                                       
Query: 185 agccgccaagtgcttattaagccctcttggatgaggttggctcaacgggtgtaggccctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 439 agccgccaagtgcttattaagccctcttggatgaggttggctcaacgagtgtaggccctt 380

                                                                       
Query: 245 cctacagacggtcaaggtcagagggtgactcagagatcccaaggagccaaatgttgcagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctacagacggtcaaggtcagagggtgactcagagatcccaaggagccaaatgttgcagg 320

                                                                       
Query: 305 ggtggggggcataagcttcctacacgtgggaaaatgagcctccttggcccaggactgggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtggggggcataagcttcctacacgtgggaaaatgagcctccttggcccaggactgggt 260

                                                                  
Query: 365 ctggactctgagggagtggaaaggaggcaaacccctccctgtactgtctacaagc 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctggactctgagggagtggaaaggaggcaaacccctccctgtactgtctacaagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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