BAC Information

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BAC

Clone NameMSMg01-347P11
Chromosome15 (Build37)
Map Location 18,003,197 - 18,003,701
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162
Downstream geneLOC666835, LOC666839, Cdh10, EG666857
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347P11.T7 (MSMg01no347_p11.b1)MSMg01-347P11.TJ (MSMg01no347_p11.g1)
ACCAG460179AG460180
length750755
length of high quality
(start - end)
554 (45 - 598)507 (76 - 582)
definitionCHROMAT_FILE: MSMg01no347_p11.b1 PHD_FILE: MSMg01no347_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:06 2005CHROMAT_FILE: MSMg01no347_p11.g1 PHD_FILE: MSMg01no347_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCCTAGAATATCTTGTGTGGATTTGGTTTTGTCATGGAATTCTTTGG
TTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTAGAGTAGCCTGGGC
TGGCATTTGTGTTTCTTAGTGTCTGTATAACATCTGCCCAGGATCTTCTG
GCTTTCATAGTCTCTGGTGAGAAGTCTGGAGTAATTCTAATAGGCCTGCC
TTTATATGTTACTTGACATTTTTCCCTTACTGCTTTTAATATTCTGTCTT
TATTTAGTGCATTTTTTGTTCTGATTATTATGTGTTGGGAGGAATTTCTT
TTCTGGTCCAGCCTATTTGGAGTTCTGTAGGCTTCTTATATGTTCATGGG
CATCTCTTTCTTCAGGTATGGAAAGTTTTCTTTCATAATTTTGTTGAAAA
TATTAGCTGGCCCTTTAAGTTGAAAATCTTCATTCTCCTCTACTCCTATT
ATCCGTAGGTTCGGTCTTCTCATTGTGGCCTGGATTTCCTGTATGTTTTG
AGTTAGGATCTTTTTGCATTTTCCATTTTCTTTGATTGTTGTGCCCATGT
TCCCTATGGAATCTTCTGTACCTGAGATTCTCTCTTCTATCTTCCNNNNN
CTGTTGCTGATGCTCCCATCTATGGGTTATGANTTCTCTTCCACGGTTCT
TATCTGCCGATTTATTTCTCTTTTGGCCTTTTCTTCCTTGTCTCTTCCTC

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGATTCTCCTTGAACCATTTAAAT
TAAATGCTATAATTAAAAGTATGAATGGTGACACTCAGCAAAAATGAACT
TTAAAATAGTGGCTTTTTATAATAATGGGGATAATTTTGTAGCCATGGTA
ACAGATTCAGCAAGATTGAGTTTTTCAATCACAAATGTTCTAAAATAGTC
CCAAATATAAATCAATCATGGATAAAATGTATGCTATATATGTGTTACAT
GAAGGGGATACATCTCAGTTGGTATACTGTCAGGCATTTTCTAAGACCTG
CATACCATTCTGAGCACTGTAAAACCCAGACTTGGTTCATGGTCCATTCC
AGTAATCCCAACAATTGCATACTGGAGGGAAAAACATTACATTTTAAAGA
GTATCCTTGAGTACTTACTTAGCGTGATGCTCCACTAGTCCCTGTCTTTG
ACACTACAGTGCTTACATGACTTTAATATAAGAAGCAATGTTTAAGACAT
GAGTTTACATATACTTGATACATTACATCACGTTATATAATTTTTCTCTA
CTATGAGCAGTCTTCATTAAAGAAATCCAGAAGCTATATTTAGCGTCTTA
TCACTATGGTTTTTTGTCACAAATCTCCCTCCACTCACACTCTAACTATG
GAAGTTATTGAGAAAACAAAGTTAACCTCTTACAAACACTCATCCTCCTT
GTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_p11.g1 MSMg01no347_p11.g1 CHROMAT_FILE:
MSMg01no347_p11.g1 PHD_FILE: MSMg01no347_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:06 2005
         (507 letters)



>mm_chr15_18002997_18003903
          Length = 907

 Score =  922 bits (477), Expect = 0.0
 Identities = 498/505 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggattctccttgaaccatttaaattaaatgctataattaaaagtatgaatggtgacact 60
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggattctccttgaatcatctaaattaaatgctataattaaaagtatgaatggtgacact 260

                                                                       
Query: 61  cagcaaaaatgaactttaaaatagtggctttttataataatggggataattttgtagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcaaaaatgaactttaaaatagtggctttttataataatggggataattttgtagcca 320

                                                                       
Query: 121 tggtaacagattcagcaagattgagtttttcaatcacaaatgttctaaaatagtcccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtaacagattcagcaagattgagtttttcaatcacaaatgttctaaaatagtcccaaa 380

                                                                       
Query: 181 tataaatcaatcatggataaaatgtatgctatatatgtgttacatgaaggggatacatct 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tataaatcaatcatggataaaatgtatgctatatatgtgttacacgaaggggatacatct 440

                                                                       
Query: 241 cagttggtatactgtcaggcattttctaagacctgcataccattctgagcactgtaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttggtatactgtcaggcattttctaagacctgcataccattctgagcactgtaaaac 500

                                                                       
Query: 301 ccagacttggttcatggtccattccagtaatcccaacaattgcatactggagggaaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagacttggttcatggtccattccagtaatcccaacaattgcatactggagggaaaaac 560

                                                                       
Query: 361 attacattttaaagagtatccttgagtacttacttagcgtgatgctccactagtccctgt 420
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attacattttaaagagtatttttgagtacttacttagcgtgatgctccactagtccctgt 620

                                                                       
Query: 421 ctttgacactacagtgcttacatgactttaatataagaagcaatgtttaagacatgagtt 480
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgaaactacagtgctttcatgactttaatataagaagcaatgtttaagacatgagtt 680

                                    
Query: 481 tacatatacttgatacattacatca 505
           |||||||||||||||||||||||||
Sbjct: 681 tacatatacttgatacattacatca 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)