BAC Information

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BAC

Clone NameMSMg01-348A17
Chromosome15 (Build37)
Map Location 82,873,672 - 82,874,211
singlet/doubletsinglet
Overlap genenone
Upstream geneNhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
Downstream geneSerhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348A17.T7 (MSMg01no348_a17.b1)MSMg01-348A17.TJ (MSMg01no348_a17.g1)
ACCAG460239AG460240
length735739
length of high quality
(start - end)		593 (38 - 630)557 (68 - 624)
definitionCHROMAT_FILE: MSMg01no348_a17.b1 PHD_FILE: MSMg01no348_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:12 2005CHROMAT_FILE: MSMg01no348_a17.g1 PHD_FILE: MSMg01no348_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
AAGGTGCCGATACAGTTCTGGATTCTCTGTCTCTCTCTGCCTGCCTCTGT
CTCTCTCTCCCTCCTTTCTTAACCCCCTCGCCCTCCCCCGCTTGTGTACA
CACACACACACACACACACACACACACACACACACGGTCTCATGTAACCC
AGGCTAGCCTCAACTTTGCTACTTAGTGGAGGTTGACCCTGACCCATCTG
GGATTACAGGCTGGAATCACAGGTGTGTCGCACGATGCCCCACTTTTCCT
TTAACGTGTCTTTTCATGGTATGCTTTTTGGACTCTGACCCAGCACCCTC
TCCGACTTCTGCCTGGCCCCGCTGGGCTCTCTCCTGACCTCACAGGCTCC
AGCGTGTCCTGGCTCTTCTAACTCAGCTCATATTCCCCTTTCCCCCAAGG
GTTTCCTGGGAAGCTCACGGGGAGAAAACGGTTGAAAAACTGCTCAGTAA
ACCCCGGATTTACCAGCAAATGAGAAGGCTTATGACTAAAGACTCCATAC
AGAATACTCAGGCAGGACTCCATCAGTCTTCCCTCCTGTCAGCAAAGAGG
AGGGGGCACAGGGGACACATACTGCACAGACATCACCTTTTCCCACAGAT
CTGGGCCCCCCCCCCTTCCTGGTTCACCCCAGTTAAGGGAAATCTGATTT
CTGCCCAGGGTTCCCGACCCTCTGCAGATGTTGGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCTGGAGACTTTTACGGTACAGGAAGGTGCTG
TGTGCTTCTGTGGTGGTGTGAATGAAAATGGCCCCCAGGAGCCCATAGGA
AGTGTTGCTATTCAGACGTGTGGCCTTGTTGGAGGAAGTGTACCACAAGT
GCTCCCAGTGTCCCTCTCCTCCTGCTACCTGCAGATGTAGAACTCTCAGC
TATCTCATCAGCACCATGTCTGCCTGCATGCCACCATGTTTCCTATGACA
ATAAATATAAAACTCTGAAACTGTAGGCCAGCCACAATTAAACTTTTTTC
TTGTTCAGAGGTGCCATGGCCATGGTGTCTCTTCACAGCAACAGAAACCC
TAACTAAAACAGCTTCCAAACAAGAAAAGCAACCAACAGCCCTCTCCAAC
TGCAACACTCACAGCAAACCAGCATGACAAAATAACTTTAAGATGAAATA
GTGGCACACATATCCTGTTGATAACCAACAGCTGTCTAATTTGAGTTAGG
GCAGAAGAAAAACCATGCCTGTTACTTGAAACCTAGCTAACTACATGGGA
TAAGTGAGGTCTTCAACTTGAGGAGAACCTTTTTGGTTATTTTGGTTTTG
GTTGGTTGTTTTTTGTTTTTCAAGAAAGGNTTTCTCTGTGTAGCCCTGGC
TGTCCTGGAACTCCTTTATAAACAGGCTGGCCTCCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_a17.b1 MSMg01no348_a17.b1 CHROMAT_FILE:
MSMg01no348_a17.b1 PHD_FILE: MSMg01no348_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:12 2005
         (593 letters)



>mm_chr15_82873219_82874211
          Length = 993

 Score =  944 bits (488), Expect = 0.0
 Identities = 527/540 (97%)
 Strand = Plus / Minus

                                                                       
Query: 54  ctgcctctgtctctctctccctcctttcttaaccccctcgccctcccccgcttgtgtaca 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 ctgcctctgtctctctctccctcctttcttaaccccctcgccctcccccgcttgtgtaca 934

                                                                       
Query: 114 cacacacacacacacacacacacacacacacacacggtctcatgtaacccaggctagcct 173
           ||||||||||||||||| | | | | | | | | ||||||||||||||||||||||||||
Sbjct: 933 cacacacacacacacacgcgcgcgcgcgcgcgcgcggtctcatgtaacccaggctagcct 874

                                                                       
Query: 174 caactttgctacttagtggaggttgaccctgacccatctgggattacaggctggaatcac 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 caactttgctacttagtggaggttgaccctgacccatctgggattacaggctggaatcac 814

                                                                       
Query: 234 aggtgtgtcgcacgatgccccacttttcctttaacgtgtcttttcatggtatgctttttg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aggtgtgtcgcacgatgccccacttttcctttaacgtgtcttttcatggtatgctttttg 754

                                                                       
Query: 294 gactctgacccagcaccctctccgacttctgcctggccccgctgggctctctcctgacct 353
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 753 gactctgacccagcaccctctccgacttctgcctcgccccgctgggctctctcctgacct 694

                                                                       
Query: 354 cacaggctccagcgtgtcctggctcttctaactcagctcatattcccctttcccccaagg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cacaggctccagcgtgtcctggctcttctaactcagctcatattcccctttcccccaagg 634

                                                                       
Query: 414 gtttcctgggaagctcacggggagaaaacggttgaaaaactgctcagtaaaccccggatt 473
           |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 633 gtttcccgggaagctcacggggcgaaaacggttgaaaaactgctcagtaaacccgggatt 574

                                                                       
Query: 474 taccagcaaatgagaaggcttatgactaaagactccatacagaatactcaggcaggactc 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 taccagcaaatgagaaggcttatgactaaagactccatacagaatactcaggcaggactc 514

                                                                       
Query: 534 catcagtcttccctcctgtcagcaaagaggagggggcacaggggacacatactgcacaga 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 catcagtcttccctcctgtcagcaaagaggagggggcacaggggacacatactgcacaga 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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