BAC Information

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BAC

Clone NameMSMg01-348D10
Chromosome15 (Build37)
Map Location 64,201,568 - 64,300,601
singlet/doubletdoublet
Overlap geneDdef1
Upstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik
Downstream geneAdcy8, LOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348D10.T7 (MSMg01no348_d10.b1)MSMg01-348D10.TJ (MSMg01no348_d10.g1)
ACCAG460365AG460366
length730740
length of high quality
(start - end)		331 (42 - 372)542 (70 - 611)
definitionCHROMAT_FILE: MSMg01no348_d10.b1 PHD_FILE: MSMg01no348_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:26 2005CHROMAT_FILE: MSMg01no348_d10.g1 PHD_FILE: MSMg01no348_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,201,568 - 64,201,897)(64,300,060 - 64,300,601)
sequence
AGCAACCGATATACGACTCACTATCCCGAGAGGATCCGCGGAATTCATTT
TATCTTGATTTCCATTGAAGAACTTATTTCTCAATACTTTACAATCTGAG
ATTCTAGGGATTAGGACTTTAAAAACACATTTTTGGAAGGTCATGACTTA
ACCTGCAACAATCAGCCCCACTCTCACGAAGGCAGCTTCCATTTCCTGTT
CCCTAGTCCCCAGGTACCAGGCACGTGCTCTCCACATACCTCTTCAGAGA
CTTCTGGTCACAGCTCAAGAAGTCTGCTTCTCTCCATTTGAAAGAAAACA
AACCTGAAGCTCCGAGAGACCTCAGAGCTTTTTCAGGTCATCAAATAATC
CAATAAAAGTCCAGGCCGGGGATCACGTGGGCCCAGCCATCCACCACTCC
AGAAGCTGTGTTTCTGCTGCTCACTCTGCAGACGTGGTTGCCATCTGTAT
ATGCTCCACGCGGTTCATCTCCTCATACTGCAAGTTTAAAATCTCCTCAC
TGAACTCAACTTACCCCAACCATCTCGAAACTCGTCCCAAGAGCAATATA
TCCTACACATTTGTGTGTCGTCAATCCGCACGCTTTATTTAGAATAGAAT
TTTCGACCAGCAACCCCTACCCTTTTCACTGGCTTAACTCATACACCTCC
ACTGATCTCGTTTTTACAATCCATTCCCCTTGTGATTTTTGACCCCGGGG
TCATTACTCTCACCTCTCACGCATGACACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATAAGTTTCCTTGATATCTTGGAAAGACAC
ATTGTTTTCTTGATATTTTGGTAAGATATAAACATATAAACATGTAAACA
TGTTTACATATGCTCCTGGGTGATCATCAACAGTACACGGACTTCTGTTA
TTCATCTGTCAAGTTATGGAATGGAGAGGGAAGACATAAAGTGACATCCA
GAAGGACAGGTGATTCCAGTTGCTTCATTTAAACTTGATGACTATTGTTC
CATTTTTACTCTGCATTCCTAGTTCTGAAACTGTGTGGCTGTTTTGAGCA
CTGAGACCATGTGGATGTGGCTACCTAAGCACTGCCCTTCTAGCCATAAA
GCCTAGTGCCATTTTCCCAACTCTCACTGGAAATGACATGTGTTAATAAA
GGATGAATAGAAAGTTCCTTGCATAGGAAGAACATTTAGCTGTATCTTTA
TGTACAACAGACTGCAGCTAGACTTGGGCACTTTGTAGCTTGGCTTGATT
CATCACCACTCCAAAAGATGCAGTTGTCCTCATCAAATGCTTAGCATATA
CTGATTCCTCATTNAAAGGGAATGTGCATCCCACTATTTCAAAGGCTCCC
TTCCCTCTGTGTTTAGACCACATGTCGAACCTGGTTTCTTTATGAATCTT
TGTCAGGTTGCTAATATTTTCTTCCTTGAAGTTGCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_d10.b1 MSMg01no348_d10.b1 CHROMAT_FILE:
MSMg01no348_d10.b1 PHD_FILE: MSMg01no348_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:26 2005
         (331 letters)



>mm_chr15_64201368_64202098
          Length = 731

 Score =  592 bits (306), Expect = e-173
 Identities = 324/330 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcattttatcttgatttccattgaagaacttatttctcaatactttacaatctgaga 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcattttaacttgatttccattgaagaacttatttctcaatactttacaatctgaga 260

                                                                       
Query: 61  ttctagggattaggactttaaaaacacatttttggaaggtcatgacttaacctgcaacaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttctagggattaggactttaaaaacacatttttggaagggcatgacttaacctgcaacaa 320

                                                                       
Query: 121 tcagccccactctcacgaaggcagcttccatttcctgttccctagtccccaggtaccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagccccactctcacgaaggcagcttccatttcctgttccctagtccccaggtaccagg 380

                                                                       
Query: 181 cacgtgctctccacatacctcttcagagacttctggtcacagctcaagaagtctgcttct 240
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cacgtgctctccacatatctcttcagagacttctggccacagctcaagaagtctgcttct 440

                                                                       
Query: 241 ctccatttgaaagaaaacaaacctgaagctccgagagacctcagagctttttcaggtcat 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ctccatttgaaagaaaacaaacctgaagctccgagagacctcagagttttttcaggtcat 500

                                         
Query: 301 caaataatccaataaaagtccaggccgggg 330
           ||||||| ||||||||||||||||||||||
Sbjct: 501 caaataagccaataaaagtccaggccgggg 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no348_d10.g1 MSMg01no348_d10.g1 CHROMAT_FILE:
MSMg01no348_d10.g1 PHD_FILE: MSMg01no348_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:26 2005
         (542 letters)



>mm_chr15_64299860_64300801
          Length = 942

 Score =  994 bits (514), Expect = 0.0
 Identities = 535/542 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataagtttccttgatatcttggaaagacacattgttttcttgatattttggtaagatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aataagtttccttgatatcttggaaagacacattgttttcttgatattttggtaagatat 683

                                                                       
Query: 61  aaacatataaacatgtaaacatgtttacatatgctcctgggtgatcatcaacagtacacg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaacatataaacatgtaaacacgtttacatatgctcctgggtgatcatcaacagtacacg 623

                                                                       
Query: 121 gacttctgttattcatctgtcaagttatggaatggagagggaagacataaagtgacatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gacttctgttattcatctgtcaagttatggaatggagagggaagacataaagtgacatcc 563

                                                                       
Query: 181 agaaggacaggtgattccagttgcttcatttaaacttgatgactattgttccatttttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaaggacaggtgattccagttgcttcatttaaacttgatgactattgttccatttttac 503

                                                                       
Query: 241 tctgcattcctagttctgaaactgtgtggctgttttgagcactgagaccatgtggatgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 tctgcattcctagttctgaaactgtgtggctgttttgagcactgagaccttgtggatgtg 443

                                                                       
Query: 301 gctacctaagcactgcccttctagccataaagcctagtgccattttcccaactctcactg 360
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctacctaagcactgacctcctagccataaagcctagtgccattttcccaactctcactg 383

                                                                       
Query: 361 gaaatgacatgtgttaataaaggatgaatagaaagttccttgcataggaagaacatttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaaatgacatgtgttaataaaggatgaatagaaagttccttgcataggaagaacatttag 323

                                                                       
Query: 421 ctgtatctttatgtacaacagactgcagctagacttgggcactttgtagcttggcttgat 480
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgtatctttatgtacaagagtctgcagctagacttgggcactttgtagcttggcttgat 263

                                                                       
Query: 481 tcatcaccactccaaaagatgcagttgtcctcatcaaatgcttagcatatactgattcct 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcatcaccactccaaaagatgccgttgtcctcatcaaatgcttagcatatactgattcct 203

             
Query: 541 ca 542
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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