BAC Information

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BAC

Clone NameMSMg01-349L24
Chromosome15 (Build37)
Map Location 31,170,809 - 31,344,418
singlet/doubletdoublet
Overlap geneDap, EG625796, 5730557B15Rik
Upstream geneCtnnd2, 9630009A06Rik
Downstream geneRopn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik, Sema5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349L24.T7 (MSMg01no349_l24.b1)MSMg01-349L24.TJ (MSMg01no349_l24.g1)
ACCAG461531AG461532
length748762
length of high quality
(start - end)		492 (41 - 532)433 (78 - 510)
definitionCHROMAT_FILE: MSMg01no349_l24.b1 PHD_FILE: MSMg01no349_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:27 2005CHROMAT_FILE: MSMg01no349_l24.g1 PHD_FILE: MSMg01no349_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,170,809 - 31,171,296)(31,343,986 - 31,344,418)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTCTGTTTGAGAGTTTGAGGAAGGCCTCACCCCGAAGTCTAGGCTGGCT
TCAAACATGAGACACACACACATAACGTCTACAAAACAGAAGGCAACCTA
ATTGATAATAGTGAAATCAGCAATAGAACTTGATACTACCCCATCATCAG
CAATAGAACTTGATCAGCTAATATCTCCAAGGTCCTACCACCCTTGTGGT
GAAGTTTCCCGTTAGTGAGGATGTGATTTTACATTTCTGATGACCTTCTG
GGTAATTTCAGGTTTGGTGGACGCGGACTGCATCTTGTCAGACCCAATTA
GACCATTGGCATTTACTACGTTGTTGGTGATGAACTCAGATATGAAATTT
TTCTTTCCTTTCTGCTCCCAAGTGCTCATTTAGATTAGCCTCCTTGTAAG
CCGCTTGCCCATTTTGAGAAAGCTAGTTTAGTTAGATTCATTCCTAAGGC
AGCATTTGAACATAGTTCTGGGCTCTTGAGGTGTGTCAAGGTAGAACTGA
GACAGNTGGNCTCAGGAAACATACATAGCTGTACATAAATTGGTGAGGGC
AGATGAAGGGTATGGCTCTGAGGGGCCCGCTATCTGCCCTGAGAACCATT
GATGGAAGTCCACTGAAAACAAGGGGTCAGCCCCCCCGGTAATTGTGGGC
ATTAAACTAATGGGATTTGGTTTTTAAGAACCCACGTAATGGTTGGTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATAGCAGTTGGAGTTGGGGTGG
GGGTGGCCCTGTTCTGTTCTCTCAGGTCTTCACTCTCTGATCAGCAGCCA
AGGCTCTGGGCTGGAGCAGGTTGCTCTAGCTTGCCCCTGTGTCCACCCTG
CCGATGCCTTGTTGAAATGCAGCTTTGATTCTCTGATCCTGGGTGGGACA
GTCACATGAGAATCCCACTTTCTGCAGTTTCAAGAACCTCAAGTCAGCTT
ACCTTCTGAGCCTTTGGGTTGTTTCAGTGTGTTGGGATGTGGAAGACCTA
CCTGTATTACCCAGTGGGGTGAGCTGCACCCAGATATCCCCTAGGGATTA
TCAGTTGTGAACTCAAGGGCAGCACTGAGACCTGGGTTGTATCTAGGAAG
TGTTCTAAATGGCTAGAAGCTGAGCCATGCTTGGAGATCCTGTCTTAATT
AACAAAGAGTGACCTAGACCCTGGAAACTAGTGCCCTTGGCCATTCCAGT
GGCAGAGACTGGGGGCTACTAGGACTTTCGGCCCTAATCTGACATGTTGA
AAACTATGCGGCGAATTTAGAAGCCCACTTAGGTTAGAGCCTCACTTTTT
TATGCCTTAAAAAATACCTTGTCCAAGGCAATTTTTAAAAAAGGTTTTGT
TGAACCCCCTCTCCCAAAAAGACCCCGTTCCAATGGGGAACCCAGTTCCG
GCAAAAATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_l24.b1 MSMg01no349_l24.b1 CHROMAT_FILE:
MSMg01no349_l24.b1 PHD_FILE: MSMg01no349_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:27 2005
         (492 letters)



>mm_chr15_31170605_31171496
          Length = 892

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctgtttgagagtttgaggaaggcctcaccccgaagtctaggctggcttcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctgtttgagagtttgaggaaggcctcaccccgaagtctaggctggcttcaa 264

                                                                       
Query: 65  acatgagacacacacacataacgtctacaaaacagaaggcaacctaattgataatagtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatgagacacacacacataacgtctacaaaacagaaggcaacctaattgataatagtga 324

                                                                       
Query: 125 aatcagcaatagaacttgatactaccccatcatcagcaatagaacttgatcagctaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcagcaatagaacttgatactaccccatcatcagcaatagaacttgatcagctaatat 384

                                                                       
Query: 185 ctccaaggtcctaccacccttgtggtgaagtttcccgttagtgaggatgtgattttacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctccaaggtcctaccacccttgtggtgaagtttcccgttagtgaggatgtgattttacat 444

                                                                       
Query: 245 ttctgatgaccttctgggtaatttcaggtttggtggacgcggactgcatcttgtcagacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctgatgaccttctgggtaatttcaggtttggtggacgcggactgcatcttgtcagacc 504

                                                                       
Query: 305 caattagaccattggcatttactacgttgttggtgatgaactcagatatgaaatttttct 364
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 505 caattagaccattggcatttactatgttgttggtgatgaactcagatgtgaaatttttct 564

                                                                       
Query: 365 ttcctttctgctcccaagtgctcatttagattagcctccttgtaagccgcttgcccattt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcctttctgctcccaagtgctcatttagattagcctccttgtaagccgcttgcccattt 624

                                                                       
Query: 425 tgagaaagctagtttagttagattcattcctaaggcagcatttgaacatagttctgggct 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 tgagaaagctagtttagttagattcattcctaaggcagcatttgaacatagttctgagct 684

                   
Query: 485 cttgaggt 492
           ||||||||
Sbjct: 685 cttgaggt 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_l24.g1 MSMg01no349_l24.g1 CHROMAT_FILE:
MSMg01no349_l24.g1 PHD_FILE: MSMg01no349_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:27 2005
         (433 letters)



>mm_chr15_31343786_31344618
          Length = 833

 Score =  806 bits (417), Expect = 0.0
 Identities = 429/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagcagttggagttggggtgggggtggccctgttctgttctctcaggtcttcactctc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aatagcagctggagttggggtgggggtggccctgttctgttctctcaggtcttcactctc 574

                                                                       
Query: 61  tgatcagcagccaaggctctgggctggagcaggttgctctagcttgcccctgtgtccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgatcagcagccaaggctctgggctggagcaggttgctctagcttgcccctgtgtccacc 514

                                                                       
Query: 121 ctgccgatgccttgttgaaatgcagctttgattctctgatcctgggtgggacagtcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctgccgatgccttgttgaaatgcagctttgattctctgatcctgggtgggacagtcacat 454

                                                                       
Query: 181 gagaatcccactttctgcagtttcaagaacctcaagtcagcttaccttctgagcctttgg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 453 gagaatcccactttctgcagtttcaagaacctcaagtcagcctaccttctgagcctttgg 394

                                                                       
Query: 241 gttgtttcagtgtgttgggatgtggaagacctacctgtattacccagtggggtgagctgc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 393 gttgtttcagtgtgttgggatgtgggagacctacctgtattacccagtggggtgagctgc 334

                                                                       
Query: 301 acccagatatcccctagggattatcagttgtgaactcaagggcagcactgagacctgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acccagatatcccctagggattatcagttgtgaactcaagggcagcactgagacctgggt 274

                                                                       
Query: 361 tgtatctaggaagtgttctaaatggctagaagctgagccatgcttggagatcctgtctta 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgtatctagggagtgttctaaatggctagaagctgagccatgcttggagatcctgtctta 214

                        
Query: 421 attaacaaagagt 433
           |||||||||||||
Sbjct: 213 attaacaaagagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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