BAC Information

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BAC

Clone NameMSMg01-351D23
Chromosome15 (Build37)
Map Location 45,506,563 - 45,506,933
singlet/doubletsinglet
Overlap genenone
Upstream gene5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351D23.T7 (MSMg01no351_d23.b1)MSMg01-351D23.TJ (MSMg01no351_d23.g1)
ACCAG462665AG462666
length746773
length of high quality
(start - end)
541 (54 - 594)373 (85 - 457)
definitionCHROMAT_FILE: MSMg01no351_d23.b1 PHD_FILE: MSMg01no351_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:27 2005CHROMAT_FILE: MSMg01no351_d23.g1 PHD_FILE: MSMg01no351_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTATTTAGCTCTGTGATCCACATTTTATAAAAGAGT
TATTTTGTTTTCTGGAGGTTGCTATCATGACTTCTTTGTATATTTTGGAT
ATTAGCCCATTATAGGATGTAGGGTTTGTAAATATCTTTTTCCCAATCTG
TGGGGTGCTGTTTTGTCCTTTTGATAGTGTCCCTCGCTTTATAGAAGCTT
TTCAATTTTATGAGGTGCCATTTGTTGATTGTTGCTCTAATGCCTAAGCC
ATTGGTGATCTGTTTAGGAAGTTTGTCCCTGTGCCCAAATATTCGAGTCT
TTTCGCTACTTTTTCTTCTCTTTGATTCAGTGTATCAGGTTTTATGTGGA
GGTCCTTGATCCACTTGGGTTTGAGCATTCTGCAAGGAGATAGATATGGA
TCAATTTGCATTCTTCATAATATGGAAAGCATCATTTGTTGAAAATGCTG
TAATTTTTTTTACTAAATGGTTTCAGCTTTTTTCTCAAAGTTCAAGTGAT
CATAAGTGTTCAAGTGATCATGGGTTCAGNTTTGGGTTTTCAATTGTATT
CCATTGATATACTTGCCTGTTTCTGTACCAATACTATGGGGTTTTTATCA
CTATTGCTTTGTAATACAGGTTGCAGTCTGGGATGGTGATTCCCCTAAAA
ATTTCTTATTGTTAAAAATAATGCTCACCAATCTAGGTAATTTAAN
NNNNNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTGCATAAGATAT
AACCCATCATCTATCTGCCCTAAGCCCAGGTACCCACTATATGATCCATT
CTCAAACATACAGCATGATTGTGCTATAGTTCTGGTGCACTGCCAGTACG
TCAGGGCAGAATTGACTGACATACCCTGGACAGACGATGAACTATGTACT
TCTCAGATGGATGGGAACAGCTTCATCCAGAATGGAGTCAGGTATGCAAG
GGTGGCAGTAATGAACTTGGACTCTACAACTGCTTTTCGGCTGGGAAATT
CATCCCAAAAAGCTGAATTAAAGGCTCTAACTCAGGCTGTAAAACTGGCA
AAAGGAGCTATAGCTAATTATGGCTTCCTCTCAAATTGGTCATAACTCAT
TGACTCAGCCATCAGAATGGGGCATCATTTATAGCCCGAGGGAAGAGGCT
AGCTGTTAAAGCTGAAAGAAAGACCACTCAAGCTTCCACTGGCAACATCA
TGGTAGCTTTGGTGACACTACAGGCTCCCCACCATCCCTGAATATAGTGA
TGAAGACAAATGACATCCCGGGAAAATGCCAAGAGGTTACAGAAAAGATG
GGGGTGTTTGTTGAACTCTTGAGGGTTGCACTCCTTACTAGGAAGTTTGT
TAGAGACTCTCCTTCAAAACATCAAGTTTATTATTGGGCCCTAAAAATGA
AGGAATGGCCTGAGGGGAAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_d23.g1 MSMg01no351_d23.g1 CHROMAT_FILE:
MSMg01no351_d23.g1 PHD_FILE: MSMg01no351_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:27 2005
         (373 letters)



>mm_chr15_45506361_45507133
          Length = 773

 Score =  650 bits (336), Expect = 0.0
 Identities = 363/372 (97%), Gaps = 2/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cttgcataagatataacccatcatctatctgccctaagcccaggtacccactatatgatc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cttgcataagatataacccatcatctatctgccctaagcccaggtacccactatatgatc 262

                                                                       
Query: 63  cattctcaaacatacagcatgattgtgctatagttctggtgcactgccagtacgtcaggg 122
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 263 catcctcaaacatgcagcatgattgtgctatagttctggtgcactgccagtacgtcaggc 322

                                                                       
Query: 123 cagaattgactgacataccctggacagacgatgaactatgtacttctcagatggatggga 182
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagaattgactgacataacctggacagacgatgaactatgtacttctcagatggatggga 382

                                                                       
Query: 183 acagcttcatccagaatggagtcaggtatgcaagggtggcagtaatgaacttggactcta 242
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acagcttcatccagaatagagtcaggtatgcaagggtggcagtaatgaacttggactcta 442

                                                                       
Query: 243 caactgcttttcggctgggaaattcatcccaaaaagctgaattaaaggctctaactcagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caactgcttttcggctgggaaattcatcccaaaaagctgaattaaaggctctaactcagg 502

                                                                       
Query: 303 ctgtaaaactggcaaaaggagct-atagctaattatggcttcctctcaaattggtcataa 361
           ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct: 503 ctgtaaaactggcaaaaggag-tcatagctaattatggcttcctctcaaattggtcgtaa 561

                       
Query: 362 ctcattgactca 373
           |||||| |||||
Sbjct: 562 ctcatttactca 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)