BAC Information

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BAC

Clone NameMSMg01-352G10
Chromosome15 (Build37)
Map Location 50,600,158 - 50,743,659
singlet/doubletdoublet
Overlap geneTrps1, LOC100039644
Upstream geneLOC665160
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352G10.T7 (MSMg01no352_g10.b1)MSMg01-352G10.TJ (MSMg01no352_g10.g1)
ACCAG463537AG463538
length749806
length of high quality
(start - end)
516 (51 - 566)169 (82 - 250)
definitionCHROMAT_FILE: MSMg01no352_g10.b1 PHD_FILE: MSMg01no352_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:56 2005CHROMAT_FILE: MSMg01no352_g10.g1 PHD_FILE: MSMg01no352_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,600,158 - 50,600,669)(50,743,498 - 50,743,659)
sequence
NNGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACATATGCATTTACCTGACACGAGTAAACCTAACTTCATC
ATCATATATGTGAAGAGTGTACTTAAAACAATAATATTGATACAACAGAA
ATATGGCAACAAAGATAATTACCTAGAACCTCTTTCCACAACCTAGTAGT
CACTAACCAGCTAAGACTATTAAAATTATGCTTAAGGGAATTAGATATAT
TTCACCAAAATTTGTGTCTCAATGGGAAACTTAACACAAGACTTAACAAT
ATTTGTATAGCAAAATTTCCCATATCACAGAAATTTCTAACACAGAGTAA
AATAGAGGTGTCTTACAATTTGGAGCATGTTAAAGCAGCTTAGCACACTC
TTCACCTAAAATGGTAATGATAGTATTAGCACAGTACACACAGGGAGATA
AAGTTGGGACGGAAATATTTGTACTGTACACTCAGGGGAGAACTTGATAG
CAAGATAAATCAGGTTAAAATGGAAACATACAAATGACTAAAATACATTC
TGGATCGTTTTGTTTATAGTGGCAGTGCTATAATGGACCGAGTTTCATTT
TCCATAATTGAAGATCTCTGAAATACTTGGCAACCCCTCCTCACAAAAAT
CACCAGTACTATGAACCTATGTGTGCCAAATTTCTTATCTCCAACTATGT
GTTCACCTCAACATCTCAGAAGACTATAACCGTGCTGAAGGGATTCATT
NNCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACATTGACCTGAAATT
TCATTCTGAATGTCAAAGAATGCAAAATATATGTCACGTTTGATTTATGG
AGTGACTGGAATATTGATGTATTATGAAATTAATGCAACAGAAGACTATC
TTTGGCTTTCAGATAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNT
TNNTCCTTCCCCTCTCCCCTCCTCCCTTCTCTCCTCTCTTTTTCCCCCCC
CCCTTTTTCCCCTTCCCCCCCTTTTTTTTTTCCCCTTCCCCCTCCCTCCC
TCTCCCTTCTCTTTTTTTCTTTCCCCCCCTCTTCCTCCCTTTTTCCTCCC
TCTTTTTTCTCCTTTTTCTTTCTCTCCCCCCCTTCTCTTCCCTTTCCTCC
TCCCTTCCCCTTTTTCCCTTTCCCTTCTCTTCCCCTTTTTCCTTTCTCTC
TTTCCTTTTTCCTCCTCCTTCTCCTTCTCCTCTTCCCTTTTTTCCCTCCC
CTTTCCTCTTCTTTTTCCCCCTTTTTCTTTTCCTTTCTTTTTTCCCCTTC
TTCTTCCCCCCTTCCTTCCCCTTCTTTCCTTCCTTTTTTCTTCCCTTTTT
TCCTTTCTTCCCTTTTCCTTTTTTTTTCTCTCCCTTTTCCCCTCCTTCTC
CCTTTTCTTCCTCCCCCCCCTCCTTTCTCTCCTTCCCCCTCTCCCCCTCC
CTCCCTCTCCCTCCTTCTCCCCCCTTCCTCTCTTCCCCCTCCCTTCCCCT
TCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_g10.b1 MSMg01no352_g10.b1 CHROMAT_FILE:
MSMg01no352_g10.b1 PHD_FILE: MSMg01no352_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:56 2005
         (516 letters)



>mm_chr15_50599954_50600869
          Length = 916

 Score =  982 bits (508), Expect = 0.0
 Identities = 511/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatatgcatttacctgacacgagtaaacctaacttcatcatcatatatgtgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatatgcatttacctgacacgagtaaacctaacttcatcatcatatatgtgaa 264

                                                                       
Query: 65  gagtgtacttaaaacaataatattgatacaacagaaatatggcaacaaagataattacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtgtacttaaaacaataatattgatacaacagaaatatggcaacaaagataattacct 324

                                                                       
Query: 125 agaacctctttccacaacctagtagtcactaaccagctaagactattaaaattatgctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaacctctttccacaacctagtagtcactaaccagctaagactattaaaattatgctta 384

                                                                       
Query: 185 agggaattagatatatttcaccaaaatttgtgtctcaatgggaaacttaacacaagactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggaattagatatatttcaccaaaatttgtgtctcaatgggaaacttaacacaagactt 444

                                                                       
Query: 245 aacaatatttgtatagcaaaatttcccatatcacagaaatttctaacacagagtaaaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacaatatttgtatagcaaaatttcccatatcacagaaatttctaacacagagtaaaata 504

                                                                       
Query: 305 gaggtgtcttacaatttggagcatgttaaagcagcttagcacactcttcacctaaaatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggtgtcttacaatttggagcatgttaaagcagcttagcacactcttcacctaaaatgg 564

                                                                       
Query: 365 taatgatagtattagcacagtacacacagggagataaagttgggacggaaatatttgtac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taatgatagtattagcacagtacacacagggagataaagttgggacggaaatatttgtac 624

                                                                       
Query: 425 tgtacactcaggggagaacttgatagcaagataaatcaggttaaaatggaaacatacaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtacactcaggggagaacttgatagcaagataaatcaggttaaaatggaaacatacaaa 684

                                           
Query: 485 tgactaaaatacattctggatcgttttgttta 516
           |||||||| |||||||||||||||||||||||
Sbjct: 685 tgactaaagtacattctggatcgttttgttta 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no352_g10.g1 MSMg01no352_g10.g1 CHROMAT_FILE:
MSMg01no352_g10.g1 PHD_FILE: MSMg01no352_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:56 2005
         (169 letters)



>mm_chr15_50743325_50743893
          Length = 569

 Score =  306 bits (158), Expect = 6e-88
 Identities = 161/162 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacattgacctgaaatttcattctgaatgtcaaagaatgcaaaatatatgtcacgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagacattgacctgaaatttcattctgaatgtcaaagaatgcaaaatatatgtcacgttt 276

                                                                       
Query: 61  gatttatggagtgactggaatattgatgtattatgaaattaatgcaacagaagactatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gatttatggagtgactggaatattgatgtattatgaaattaatgcaacagaagactatct 216

                                                     
Query: 121 ttggctttcagataatgtgtgtgtgtgtgtgtgtgtgtgtgt 162
           |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 215 ttggctttcagataatgtgtgtgtgtgtgtgtgtctgtgtgt 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)