BAC Information

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BAC

Clone NameMSMg01-352I12
Chromosome15 (Build37)
Map Location 28,996,618 - 28,997,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352I12.T7 (MSMg01no352_i12.b1)MSMg01-352I12.TJ (MSMg01no352_i12.g1)
ACCAG463635AG463636
length788797
length of high quality
(start - end)		483 (70 - 552)276 (81 - 356)
definitionCHROMAT_FILE: MSMg01no352_i12.b1 PHD_FILE: MSMg01no352_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:07 2005CHROMAT_FILE: MSMg01no352_i12.g1 PHD_FILE: MSMg01no352_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAATTGCTCAGATCTTTTGTGTTCCATAAGTTGTAGTAAG
AATGAAGAGAGGATCCAAGAAGAATTAATGTTAAAAAGTTTCTGCTTCTA
TAATGACTTGTACGATCTTATCAATATCCCTCTACATTTTTTTTCTCTTC
AAACCTACACAAGTGATATATCATATGTGAGTGTCTGAAGACAGAATGTC
AGTGATAAAACTTCTACTTTCTCATTGTGAAAATAGACAAAAGTTCTCTT
TTTAAACTGAAGACAGGAATTAATTAAATACTTGATTGGGTGGCAAGATA
TTTAGAAAATAGTGACGTACGGTTCAGAACATGTCTCCAGAGAGGATTAG
CTTAGTGTATAACTGACCTGGCTAGGCTGTAGCTTGCAATGTTAAGTGGA
CTGTGTCTTGACTGAACATGATTTGGAAATAAATAAGGCCAGTTTTTGAG
GCTGTTCTCTCTGCTCATCATTGTTTGGTTTAACCTTGCCTTCCTTATCA
TGAGTCATTGAAACCCTCCGAATCACGACCCAAATTTCTCCTTTTTCCTT
CTNGATCCCTTCCATCCAGTGTTATTTCTCCAAAAAATACAATTGTCTGA
ATCCATGCCTTCCAACATCCTTTCCTCCTCCCATCTTTGATACCCTCTAC
CCTTTCTCCCCACACCGATTTTTTTTCTACTTCCCTTACACAACCCTCCC
TTTTATTTCCCCCCATTCCATTATCCTCTCTCCTCTTG

NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCTTC
ATTTTTTAATGGGGTTATTTTCATTTTTCTTTGTTAAGTCTTTATGCGGG
TTAGATATCAGGGTAACTATGACCTTAGAAAGCAAATTGGGAATGTTCCT
TCTGTTTCTATTTTGTACAATAGTCTAAGTAATATTGGCAATAATTTTTC
TTTGAAATTCTGGTAGAACCCTTCATTAAAACTATCTGTCCCTGGATATT
ATTATTATTATTATTATTATTATTTGATTTAGTAGATTTTTANCACCTGT
TTCCATTTCACTATGTATGTTTTAATTTCTTGCTCTGATCTTATTCACTT
TGTTTCTCCGTTTTCACTCCGACCCCCTACTATTTCCCTTCCGCCTCCTT
ACCCCTTTTCCTTTTTCCTTCTTCCCCATTGTCCTTTTTCTCTTCCTCTT
CTCCATCGCTGTTTCTCTGTCTTCACTTATTCCTCCCTTTTCTTCTGTTT
TCCGCCTTAACTTTACCTTATTTTTTCCCCCTCTATCGTCCCCTTCCCTT
CCTTGTTTCTTCCTCTTTTTCTTCCCTCTTTCCCTTTATCCCCTATCCTT
TTTTCTTCCTTTCCCTTTTCTCTCTCCTTCTCCTTTTTCTTCCCTCCCCC
CCTCCCTTTTCTCACCCTCCCCCCTTTTTCCCCTACCTACTTTTTCCTCC
TTCTCGCCTCCTCACTTATTATCCCCCCTTCCTTTTCCCTATCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_i12.b1 MSMg01no352_i12.b1 CHROMAT_FILE:
MSMg01no352_i12.b1 PHD_FILE: MSMg01no352_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:07 2005
         (483 letters)



>mm_chr15_28996418_28997301
          Length = 884

 Score =  868 bits (449), Expect = 0.0
 Identities = 476/485 (98%), Gaps = 3/485 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatcttttgtgttccataagttgtagtaagaatgaagagaggatccaagaagaattaat 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agatcttttgtcttccataagttgtagtaagaatgaagagaggatccaagaagaattaat 625

                                                                       
Query: 61  gttaaaaagtttctgcttctataatgacttgtacgatcttatcaatatccctctaca-tt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 624 gttaaaaagtttctgcttctataatgacttgtacgatcttatcaatatccctctacattt 565

                                                                       
Query: 120 ttttttctcttcaaacctacacaagtgatatatcatatgtgagtgtctgaagacagaatg 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 ttttttctcttcaaacctacacaagtgatatctcatatgtgagtgtctgaagacagaatg 505

                                                                       
Query: 180 tcagtgataaaacttctactttctcattgtgaaaatagacaaaagttctctttttaaact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagtgataaaacttctactttctcattgtgaaaatagacaaaagttctctttttaaact 445

                                                                       
Query: 240 gaagacaggaattaattaaatacttgattgggtggcaagatatttagaaaatagtgacgt 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagacagtaattaattaaatacttgattgggtggcaagatatttagaaaatagtgacgt 385

                                                                       
Query: 300 acggttcagaacatgtctccagagaggattagctt-agtgtataactgacctggctaggc 358
           ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct: 384 acggttcagaacatgtctccagagaggattagcttca-tgtagaactgacctggctaggc 326

                                                                       
Query: 359 tgtagcttgcaatgttaagtggactgtgtcttgactgaacatgatttggaaataaataag 418
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtagcttgcaatgttaagtggactttgtcttgactgaacatgatttggaaataaataag 266

                                                                       
Query: 419 gccagtttttgaggctgttctctctgctcatcattgtttggtttaaccttgccttcctta 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 gccagtttttgaggctgttctctctgctcatcattgtttggtttaaccttgccttcctca 206

                
Query: 479 tcatg 483
           |||||
Sbjct: 205 tcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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