BAC Information

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BAC

Clone NameMSMg01-352M15
Chromosome15 (Build37)
Map Location 89,317,463 - 89,317,937
singlet/doubletsinglet
Overlap geneArsa
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2
Downstream geneShank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b, Cpne8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M15.T7 (MSMg01no352_m15.b1)MSMg01-352M15.TJ (MSMg01no352_m15.g1)
ACCAG463829AG463830
length754781
length of high quality
(start - end)		527 (50 - 576)473 (78 - 550)
definitionCHROMAT_FILE: MSMg01no352_m15.b1 PHD_FILE: MSMg01no352_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:27 2005CHROMAT_FILE: MSMg01no352_m15.g1 PHD_FILE: MSMg01no352_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAATATACGACCATACCTTTTAGAACTGAAACAGTGAAGG
TGAACCAAGCCAGAATGTTCAAGAGTTTTTACACATGAAAACCATAAACA
TCTGTGCCAAGTTACAGTCACAATTTTTTTCATCAAACACAATCATTTGT
TCTTTCAAGATTAGAAACGATCATTATGTTTTAAGGAACAGAAGAAAAAT
GAGGAAGAAATGTGCTAATCATCTGGAAAGCTCCCCTAGAACCTGGGGAC
TTGAACTTAATTTCACTTTATGATCAAAATGGAGTCTGGAAACAAATGGC
AGTACTTAGGATAAGTCTCATTTGTTTGATCCCAACATGAGGAGATGTGG
CCATATTGAAGTAAATGCATCACTGGAGGTGGTCTTTGGGGTTTTCATAA
ACCCAAGCCAGGCTCAGTGACTCTCTCTTTATATATACATACATGCATGC
ATATATACATATGTATGTACATACATACATGCATATATACGTACATGCAT
ACATATGTGCATGCCTATATAGGTACCAACATACCTACATACATACATAC
ATACATACATACATATTACTGACAACTTCCAAAAGAAACTTCTCTGAAAA
AGCTGACAGATAGATAGATAGATATTTCGTATCATAGCAATACAGATTTA
TCGACTCATCCATCCTTTCCCTTCTCCCCCCTTTTTACCTTCTCCCATAA
TAAC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTAATATTTTTATTTTGA
AACCACTTTCAATGTTTGGTGTGTAGGTCAGATTTTAGACTTTTTAAATT
TTAGAGTTTGTTTTCTTTTCAAATTAATAATTTTAAAAAAATCTAATTTT
TTCTCATACAATACATCCCCACTGCAGCCTCTTCCTTCTACTCCTCGAAG
GCCCCACCCACCCTGTCTCTTTTCCAAATCCACTGCCTCTCTGTTTCCTT
TTAGAAAAGGGCAGGCCTCCCAGGGATATCAACCAAACACAGCATAACAA
GATAGAATAGGACTAGGCACATAAGACTACCTCACATCAAGGGAGGCTGA
GGCAACCCAGTGGGAGGGAAAAGGTCTCACAAGCAGGCAAAAAAGTCAGA
GACAGCCCCACTCCCATTGTTAGGAAGCTAACAAAAAACCCAAGCTAATG
CTTTAAAAGTACTTATTATTTAACCAACAAGTTTTAAAAAAAATGACAAG
GTGATTGGATTAATAGGATCTTGTTTCCAAAGTTACTATACAATCTTAGA
AATTAAACATGGTCGCGTTTTGATAACGCTTTTACTTATCTTTCATTGGG
AGAAACGGTTCTTTTTATTATGCCCCTCGGTATATGGGTCGCTGGATTTT
CTAAAAACTGGTTCACTGCGATTTCTGGGTCCCCGATACCCTTCTCATAT
ATGCGCGTGCCAATTTTCTATCACTTCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m15.g1 MSMg01no352_m15.g1 CHROMAT_FILE:
MSMg01no352_m15.g1 PHD_FILE: MSMg01no352_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:27 2005
         (473 letters)



>mm_chr15_89317263_89318135
          Length = 873

 Score =  861 bits (445), Expect = 0.0
 Identities = 467/475 (98%), Gaps = 2/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctgtaatatttttattttgaaaccactttcaatgtttggtgtgtaggtcagatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgtaatatttttattttgaaaccactttcaatgtttggtgtgtaggtcagatttta 260

                                                                       
Query: 61  gactttttaaattttagagtttgttttcttttcaaattaataattttaaaaaaatctaat 120
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 261 gactttttaaattttagagtttgttttcttttcaaattaataattaaaaaaaaatctaat 320

                                                                       
Query: 121 tttttctcatacaatacatccccactgcagcctc--ttccttctactcctcgaaggcccc 178
            |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 321 cttttctcatacaatacatccccactgcagcctcccttccttctactcctcgaaggcccc 380

                                                                       
Query: 179 acccaccctgtctcttttccaaatccactgcctctctgtttccttttagaaaagggcagg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccaccctgtctcttttccaaatccactgcctctctgtttccttttagaaaagggcagg 440

                                                                       
Query: 239 cctcccagggatatcaaccaaacacagcataacaagatagaataggactaggcacataag 298
           |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 441 cctcccagggatatcaaccaaacacagcataacaaggtagaataggactagacacataag 500

                                                                       
Query: 299 actacctcacatcaagggaggctgaggcaacccagtgggagggaaaaggtctcacaagca 358
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgcctcacatcaagggaggctgaggcaacccagtgggagggaaaaggtctcacaagca 560

                                                                       
Query: 359 ggcaaaaaagtcagagacagccccactcccattgttaggaagctaacaaaaaacccaagc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcaaaaaagtcagagacagccccactcccattgttaggaagctaacaaaaaacccaagc 620

                                                                  
Query: 419 taatgctttaaaagtacttattatttaaccaacaagttttaaaaaaaatgacaag 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatgctttaaaagtacttattatttaaccaacaagttttaaaaaaaatgacaag 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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