BAC Information

Click to search

BAC

Clone NameMSMg01-353E23
Chromosome15 (Build37)
Map Location 32,264,808 - 32,390,802
singlet/doubletdoublet
Overlap geneSema5a
Upstream gene5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353E23.T7 (MSMg01no353_e23.b1)MSMg01-353E23.TJ (MSMg01no353_e23.g1)
ACCAG464219AG464220
length775761
length of high quality
(start - end)		510 (42 - 551)437 (81 - 517)
definitionCHROMAT_FILE: MSMg01no353_e23.b1 PHD_FILE: MSMg01no353_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:09 2005CHROMAT_FILE: MSMg01no353_e23.g1 PHD_FILE: MSMg01no353_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,264,808 - 32,265,305)(32,390,366 - 32,390,802)
sequence
AAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCATAACTGTGAATGAACCAAATCAAACACATAATAAAGTCA
AGGTTAAGAAATGCATTTGGAATAAAGCTCAAAGTACTTAAAATATTTGC
AAGAACTTTTTATTTAGTGGCTCATATTATGATGTCTGTTTATTTTTAGG
AAGAGCACATGCATTTCTTCTAAAGCCACATATAAAATTGAAATGGGACA
GTGACTCCAGACTTTTATACTTGATCTTACCCAAAAGGACCAGAAGCAGT
AAAATTGAGTCTTTTATGGGTGGCTAGTTAGGAAGAAAGCCTGGAGGTTG
ATGGATAGCTTTGGAGGGATACCCAGATAGCAAGGGTTGGATGGTTTCAG
AACATTGGCTTACAAGGAGCCTGAAGCCCTTGATTTCAGAGAATAGGAGC
TTCTGAAGCAAAGTTGGAAGCTCAGTGCAGGAGTTGAAGTTAAAGGTTGA
GGTGCTTGCTTAGTGAGCACAGGGCATGCATTCAACCCTCGCGGTTACAA
CTTTAAATAACAAGGATGACAAACCTAGATACTATGCTGTCACTCATGAC
CAGTATGGATTTACTCTTGTGACGCCTCATTAACTGGAATAAGGTCCCTT
TGGCTGTTACACCGCCATCCGTACATAAAGTTCCGCCCGACGGATCCTTT
ACTATCCGAAAGAGGTCCCTTTTCAATCAATGGCCCTTATGCTCCCCATA
CCCCCGGTTTTCCTACCCGTGGTCC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATTTACATATGGCAGGTT
TCTGAGTATAGGAATTACACACATGTTCAGAGGAGATATCAGAGAGGACG
AGGGAGACAAATCTAAATGTGTGGGTTGGGCTCCTGTTTCCAGATGCACA
CAGATACTAACTCCACAAAGAAACCTGCTGTCTCTCCTCAGGGTGAGCAG
AATCATGAAGAATTACCCTTGATTTCTCAGCTTCCTGGCAATGGGCAATT
CAATGTCCCCAAAATGACAATGGAGGGTATTCAGAAGCACATGGAGGGCT
GGCTGTGGTCTCTAGAACTTTATGGATAAACATGCAGATAGGTCAAGAAC
ATGTTTCACTGGATCAGACTGCCTGGGTTTGAAACTGAGGCCTATCACAC
AGGGTCCATGGCTCTGAATAAATTGTACTCCCTTTTCTCATGTCTGAAGT
AACTTTACCTCCTTTAAAGAGAAGAACCCTGCTAGAAATCTCTGCTGAAA
TTCTGGGCTGACCTCTTTCATGAATCCGATCTAAAGAGTTTTTGGAGCTG
GGTTGTCGTTCCGCTGCTCCAGTTTTTTATCGCGAGTCCTCTGTTTCCCC
CTCTTTTTAGTTTCTCCCTCCCTGCTACTCTTTTTTCCTTCCTTTATTAA
CCCTTTTTTTTCTCCTTACCTTTCCCCCCTTGTTTCCACCCGTTTTCTTT
TTTTTGTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_e23.b1 MSMg01no353_e23.b1 CHROMAT_FILE:
MSMg01no353_e23.b1 PHD_FILE: MSMg01no353_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:09 2005
         (510 letters)



>mm_chr15_32264596_32265505
          Length = 910

 Score =  878 bits (454), Expect = 0.0
 Identities = 487/498 (97%)
 Strand = Plus / Plus

                                                                       
Query: 13  ggaattcataactgtgaatgaaccaaatcaaacacataataaagtcaaggttaagaaatg 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaattcataactgtgaatgaaccaaatcaaacacataataaagtcaaggttaagaaatg 272

                                                                       
Query: 73  catttggaataaagctcaaagtacttaaaatatttgcaagaactttttatttagtggctc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 273 catttggaataaagctcaaagtacttaaaatatttgcaagaactttttatttaatggctc 332

                                                                       
Query: 133 atattatgatgtctgtttatttttaggaagagcacatgcatttcttctaaagccacatat 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atattatgatgtctgtttatttttaggaagagcacatgcatttcttctaaagccacatat 392

                                                                       
Query: 193 aaaattgaaatgggacagtgactccagacttttatacttgatcttacccaaaaggaccag 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaaattgaaatgggacagtgactccagacttttatacttgatcttacccaaaaggaccag 452

                                                                       
Query: 253 aagcagtaaaattgagtcttttatgggtggctagttaggaagaaagcctggaggttgatg 312
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 453 aagcagtaaaattgagtcttttatgggtggctagctaggaagaaagcctggaggttgatg 512

                                                                       
Query: 313 gatagctttggagggatacccagatagcaagggttggatggtttcagaacattggcttac 372
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 gatagctttggagggctacccagatagcaagggttggatggtttcagaacattggcgtac 572

                                                                       
Query: 373 aaggagcctgaagcccttgatttcagagaataggagcttctgaagcaaagttggaagctc 432
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 573 aaggagcctgaagcccgtgatttcagagaataggagcttctgatgcaaagttggaggctc 632

                                                                       
Query: 433 agtgcaggagttgaagttaaaggttgaggtgcttgcttagtgagcacagggcatgcattc 492
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggtgcaggagttgaagttaagggttgaggtgcttgcttagtgagcacagggcatgcattc 692

                             
Query: 493 aaccctcgcggttacaac 510
           || |||||| ||||||||
Sbjct: 693 aaacctcgcagttacaac 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_e23.g1 MSMg01no353_e23.g1 CHROMAT_FILE:
MSMg01no353_e23.g1 PHD_FILE: MSMg01no353_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:09 2005
         (437 letters)



>mm_chr15_32390293_32391129
          Length = 837

 Score =  814 bits (421), Expect = 0.0
 Identities = 433/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttacatatggcaggtttctgagtataggaattacacacatgttcagaggagatatc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 510 atatttacatatggcaggtttctgagtgtaggaattacacacatgttcagaggagatatc 451

                                                                       
Query: 61  agagaggacgagggagacaaatctaaatgtgtgggttgggctcctgtttccagatgcaca 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agagaggacgagggagacaactctaaatgtgtgggttgggctcctgtttccagatgcaca 391

                                                                       
Query: 121 cagatactaactccacaaagaaacctgctgtctctcctcagggtgagcagaatcatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cagatactaactccacaaagaaacctgctgtctctcctcagggtgagcagaatcatgaag 331

                                                                       
Query: 181 aattacccttgatttctcagcttcctggcaatgggcaattcaatgtccccaaaatgacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 330 aattacccttgatttctcagcttcctggcaatgggcaattcaatgtcaccaaaatgacaa 271

                                                                       
Query: 241 tggagggtattcagaagcacatggagggctggctgtggtctctagaactttatggataaa 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 270 tggagggtattcagaagcacatagagggctggctgtggtctctagaactttatggataaa 211

                                                                       
Query: 301 catgcagataggtcaagaacatgtttcactggatcagactgcctgggtttgaaactgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 catgcagataggtcaagaacatgtttcactggatcagactgcctgggtttgaaactgagg 151

                                                                       
Query: 361 cctatcacacagggtccatggctctgaataaattgtactcccttttctcatgtctgaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cctatcacacagggtccatggctctgaataaattgtactcccttttctcatgtctgaagt 91

                            
Query: 421 aactttacctcctttaa 437
           |||||||||||||||||
Sbjct: 90  aactttacctcctttaa 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |