BAC Information

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BAC

Clone NameMSMg01-353N07
Chromosome15 (Build37)
Map Location 59,773,612 - 59,942,868
singlet/doubletdoublet
Overlap geneEG632248, LOC665613, 4933412E24Rik
Upstream geneMtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602
Downstream geneLOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353N07.T7 (MSMg01no353_n07.b1)MSMg01-353N07.TJ (MSMg01no353_n07.g1)
ACCAG464611AG464612
length759799
length of high quality
(start - end)
396 (74 - 469)229 (83 - 311)
definitionCHROMAT_FILE: MSMg01no353_n07.b1 PHD_FILE: MSMg01no353_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:48 2005CHROMAT_FILE: MSMg01no353_n07.g1 PHD_FILE: MSMg01no353_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,773,612 - 59,774,007)(59,942,642 - 59,942,868)
sequence
TTCCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCAGGGGTTTACGTCTCACTGAAGAAGACTCAAGAGAAAA
CTGGATGGTAGTGTAGAAATAGACCCTGGCTGCATATTCAGGGAGTGAGC
ATTGCATGGTAGCATGGTTGAATATAAATGCATGGCTTTGAGGAAAAGAT
CCATGGCTTAGGAATGTGAGTAGACAAATGAGAAGGAGCATGTCTGAGAT
AAATTTTGTTTGATTGTATATTTACTCTATATAACAATTAGTATTAAACT
GTCCCTTCATTATAAGCACTTCATCACCTTAGCTGTAATAATTGCTAACA
TATATATTGCTTCTTAAGTGATTTAGAGCATTCTAGAGCCCTCTGTGTAC
ATATTATAGTTCACAAAGTATTCTGGTTAATTTTTATTTGTTAATTGAAG
CAAACTGGGGTCACCTGGGAAGAAAGAACCTCAGAAGTACCCACTATGGG
CAGCACCACTCATGGGCAGGTGGTTCCTGGATTGTATAGCAATGGTTACT
TGAAATATTCATCTAGGTGTTTAGCCAACCAATTTGTCCCTTTCAGCCTT
TCTTGTTTTGCCCCCTTTTTTCCAAGTCTTTGACCCGAATATACCGCCTT
GCCCTTTCTTCCCTGACGTTCTTATTTACGTTTAATCTCTAACTATTATT
CTTTCCCCCCCTCCCTTTTTCCTACCACCCCCCATCCCTTCTTTATCCTT
CCCAAACAN
CTTCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTATGTGTCTGTGA
TGAGACACCATGTGAGGCCTTGTCTTGTCGTTTCTCTTATGGAATTTATG
CTCTGAAGAGAATGGCAAGTATTAGTCATTGAATTGAATGATGTGAGTGT
GTAGCTGCAGGGTGATCAAGGTGCTCTGAAGGAGAGGAGCACAGGTCTGT
CTCAGTGTGTGATACACAGAGGGCTGGCTGCCTAGGGCAGCAACAGTGTC
TGTCTTTAACAAAGAAATGCATGGCTTGTTTTTATAAGATAAAAGGCGTG
TCACATTACGTATTCGATCTTGCCTATTATTCTGTGCGCCTCAATTATCC
TTATGTAGCCATACACTTACCTACCTCCATTTTTTTATGCTGTTTTATTT
CCTTCTTTTCCGCATTATTCTTTCTCCTTCCCTCCTTCCCCTCTCTTTGT
CCCCCTTTTTTCCCCTCCCCTCTTCCTTTCCTTTTCCTTTCCTTCCTTTT
TTTTTTTTTTTTCTCCCTCATCCCCTTCTTTTTTTTCCCTTTTTCCCTTC
CCCTTTTTCTCCCTTTTTTTTTCCCCTTTTTTTCTTCCCCCCTTTCCTTC
CCCTATTTCACTTAATTTTCCCTCCTTTTACCCTTCTTATTTCCCCCTTT
TTCCCTCTTTTTTCCCCTTCATTTCCTCCTTTTTTACCTTTTTTCCTTTT
TTTCCCTCTTTCCTCCCTTCCGTATTTTCTTTTTTTTCCCCCTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_n07.b1 MSMg01no353_n07.b1 CHROMAT_FILE:
MSMg01no353_n07.b1 PHD_FILE: MSMg01no353_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:48 2005
         (396 letters)



>mm_chr15_59773412_59774207
          Length = 796

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcactgaagaagactcaagagaaaactggatggtagtgtagaaatagaccctggctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcactgaagaagactcaagagaaaactggatggtagtgtagaaatagaccctggctgc 260

                                                                       
Query: 61  atattcagggagtgagcattgcatggtagcatggttgaatataaatgcatggctttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattcagggagtgagcattgcatggtagcatggttgaatataaatgcatggctttgagg 320

                                                                       
Query: 121 aaaagatccatggcttaggaatgtgagtagacaaatgagaaggagcatgtctgagataaa 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagttccatggcttaggaatgtgagtagacaaatgagaaggagcatgtctgagataaa 380

                                                                       
Query: 181 ttttgtttgattgtatatttactctatataacaattagtattaaactgtcccttcattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgtttgattgtatatttactctatataacaattagtattaaactgtcccttcattat 440

                                                                       
Query: 241 aagcacttcatcaccttagctgtaataattgctaacatatatattgcttcttaagtgatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcacttcatcaccttagctgtaataattgctaacatatatattgcttcttaagtgatt 500

                                                                       
Query: 301 tagagcattctagagccctctgtgtacatattatagttcacaaagtattctggttaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagagcattctagagccctctgtgtacatattatagttcacaaagtattctggttaattt 560

                                               
Query: 361 ttatttgttaattgaagcaaactggggtcacctggg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatttgttaattgaagcaaactggggtcacctggg 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no353_n07.g1 MSMg01no353_n07.g1 CHROMAT_FILE:
MSMg01no353_n07.g1 PHD_FILE: MSMg01no353_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:49 2005
         (229 letters)



>mm_chr15_59942442_59943070
          Length = 629

 Score =  408 bits (211), Expect = e-118
 Identities = 223/227 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtatgtgtctgtgatgagacaccatgtgaggccttgtcttgtcgtttctcttatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cacagtatgtgtctgtgatgagacaccatgtgaggccttgtcttgtcgtttctcttatgg 368

                                                                       
Query: 61  aatttatgctctgaagagaatggcaagtattagtcattgaattgaatgatgtgagtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aatttatgctctgaagagaatggcaagtattagtcattgaattgaatgatgtgagtgtgt 308

                                                                       
Query: 121 agctgcagggtgatcaaggtgctctgaaggagaggagcacaggtctgtctcagtgtgtga 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 307 agctgcagggcgatcaaggtgctctgaaggagaggagcacaggtctgtctcagtgggtga 248

                                                          
Query: 181 tacacagagggctggctgcctagggcagcaacagtgtctgtctttaa 227
           |||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 247 tacacagagggccggctgcctggggcagcaacagtgtctgtctttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)