Query= MSMg01no354_h04.b1 MSMg01no354_h04.b1 CHROMAT_FILE:
MSMg01no354_h04.b1 PHD_FILE: MSMg01no354_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:36 2005
(553 letters)
>mm_chr15_40745660_40746612
Length = 953
Score = 949 bits (491), Expect = 0.0
Identities = 545/585 (93%), Gaps = 36/585 (6%)
Strand = Plus / Plus
Query: 5 gaattcttttccaagtcagtaggggtggaaaggaaataagtgactgtagactttaaattg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gaattcttttccaagtcagtaggggtggaaaggaaataagtgactgtagactttaaattg 228
Query: 65 a------------------------ctctctctctctctctctctcacacacacacacac 100
| ||||||||||||||||||||| | |||||||||||
Sbjct: 229 actctctctctctctctctctctctctctctctctctctctctctctctcacacacacac 288
Query: 101 acacacacacacacacacacacacacacacacacacacacatactttggttggttgagcc 160
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 289 acacacacacacacacacacacacacacacacaaacacacatactttggttggttgagcc 348
Query: 161 agtgttttctgatttgtagatcttaatcacaattgctaaaaaaacaaaaaacaaaaacaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agtgttttctgatttgtagatcttaatcacaattgctaaaaaaacaaaaaacaaaaacaa 408
Query: 221 acaaac-aaaaaaaatccatcctgatatttcaagtaaaaaaaaaaaaaaaaa-------- 271
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 acaaacaaaaaaaaatccatcctgatatttcaagtaaaaaaaaaaaaaaaaaaaacaaaa 468
Query: 272 ---aaaaaaaaaactccctgaaagactagcaagtgtcagtctacattagtatggcaaaga 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aacaaaaaaaaaactccctgaaagactagcaagtgtcagtctacattagtatggcaaaga 528
Query: 329 gcaaggaaaccatcgtcgcgggagagtttattacttagctgctctcagctccatatggag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gcaaggaaaccatcgtcgcgggagagtttattacttagctgctctcagctccatatggag 588
Query: 389 tcgttatggcctggagtcttaacagtgttcctcacatgaccttaccataatgcagcaggg 448
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tcgttgtggcctggagtcttaacagtgttcctcacatgaccttaccataatgcagcaggg 648
Query: 449 cttctaggtattaaaactggtctcgtatttcactgaatgttctcctggggttccagggtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cttctaggtattaaaactggtctcgtatttcactgaatgttctcctggggttccagggtt 708
Query: 509 attgtagtcagaactttaaattttgattaccttgttcattgacaa 553
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 attgtagtcagaactttaaattttgattaccttgttcattgacaa 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_h04.g1 MSMg01no354_h04.g1 CHROMAT_FILE:
MSMg01no354_h04.g1 PHD_FILE: MSMg01no354_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:36 2005
(486 letters)
>mm_chr15_40873014_40873899
Length = 886
Score = 903 bits (467), Expect = 0.0
Identities = 479/483 (99%)
Strand = Plus / Minus
Query: 1 acagatgtgaatcacttctgatggggctctcgattaaaggaacattttaactagctttcc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 683 acagatgtgaatcacttctgatggggctctcgattaaaggaacgttttaactagctttcc 624
Query: 61 tttttcacttatttggaagcaatggttttaagtagctgttaatcacaaagtagatgttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttttcacttatttggaagcaatggttttaagtagctgttaatcacaaagtagatgttga 564
Query: 121 ttgagcacagccaagtcaatgcaaaagcaaaacaccacatgacatggagattttagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgagcacagccaagtcaatgcaaaagcaaaacaccacatgacatggagattttagacaa 504
Query: 181 aggaagctatatgacagaaaggaatactcactgtcagactgtacaccatggaactggctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggaagctatatgacagaaaggaatactcactgtcagactgtacaccatggaactggctg 444
Query: 241 tgtccatgggaacccagggacttctgatggtggcctgcccttctagcctacagtgactgc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtccatgggaccccagggacttctgatggtggcctgcccttctagcctacagtgactgc 384
Query: 301 tgcattttcccaactgctatacgatgtgtttaatttgccggtgtcttttgtatgttactt 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 tgcattttcccaactgctatacgatgtgtttaattttccggtgtcttttgtatgttactt 324
Query: 361 gtgcaatgtcagaccacacttagaaattggaagcttgaaatttgggctgtatctgtagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgcaatgtcagaccacacttagaaattggaagcttgaaatttgggctgtatctgtagtg 264
Query: 421 tagtggtagagattgatgaggaacaactgatacctctacaaaagatagaggtactgtgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 tagtggtagagattgatgaggaacaactgatacctctacaaaagatagaggtactatgtc 204
Query: 481 tac 483
|||
Sbjct: 203 tac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
