Query= MSMg01no354_j05.b1 MSMg01no354_j05.b1 CHROMAT_FILE:
MSMg01no354_j05.b1 PHD_FILE: MSMg01no354_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:46 2005
(560 letters)
>mm_chr15_10119455_10120417
Length = 963
Score = 1031 bits (533), Expect = 0.0
Identities = 552/559 (98%), Gaps = 3/559 (0%)
Strand = Plus / Plus
Query: 5 gaattcattgcttcgccttgctcagcatttgacaggatgtgtctggtgtttcttttagta 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgcatcgccttgctcagcatttgacaggatgtgtctggtgtttcttttagta 264
Query: 65 acttctgatttgaccttccagataacttcctagacatcataccagtgttcttacctgtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttctgatttgaccttccagataacttcctagacatcataccagtgttcttacctgtga 324
Query: 125 cttttaaatttttagttttctcctggcttaaactaatggggcaaaaaaaaaa--tatgca 182
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 325 cttttaaatttttagttttctcctgtcttaaactaatggggcaaaaaaaaaaaatatgca 384
Query: 183 tgaaaattgtctttaattcttactctccagcctttgcaaaaatttcaaaaa-ttcatgtg 241
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 tgaaaattgtctttaattcttactctccagcctttgcaaaaatttcaaaaaattcatgtg 444
Query: 242 tgagattatgaatcaaatcctcttttaagccaccccacttccaatatattataactccat 301
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tgagattatgaatcaaatcctcttttaagccatcccacttccaatatattataactccat 504
Query: 302 gaagccaaagcccatggtttacactaactactaccagttctaactcatcaccgtactgga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagccaaagcccatggtttacactaactactaccagttctaactcatcaccgtactgga 564
Query: 362 atttcccttctaaacataaatatattatttagtgtggttatttgaagatcaactgaagta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttcccttctaaacataaatatattatttagtgtggttatttgaagatcaactgaagta 624
Query: 422 ttttcaaagaagtacagtggaagtaatgaaacaaaatgggaagcccacctctaccttggt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttcaaagaagtacagtggaagtaatgaaacaaaatgggaagcccacctctaccttggt 684
Query: 482 ggccatgattatcaacagtaggtctacaaaaattccaagaggatttgttgagtcctgaga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggccatgattatcaacagtaggtctacaaaaattccaagaggatttgttgagtcctgaga 744
Query: 542 tctatacctgctaagaatc 560
|||| ||||||||||||||
Sbjct: 745 tctaaacctgctaagaatc 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 963
Length adjustment: 10
Effective length of query: 550
Effective length of database: 953
Effective search space: 524150
Effective search space used: 524150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_j05.g1 MSMg01no354_j05.g1 CHROMAT_FILE:
MSMg01no354_j05.g1 PHD_FILE: MSMg01no354_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:46 2005
(397 letters)
>mm_chr15_10304761_10305558
Length = 798
Score = 739 bits (382), Expect = 0.0
Identities = 394/398 (98%), Gaps = 1/398 (0%)
Strand = Plus / Minus
Query: 1 ccttggcccttgctttgatgggaaaacctcaaccaatacaatttactttgtctatgctg- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccttggcccttgctttgatgggaaaacctcaaccaatacaatttactttgtctatgctgt 383
Query: 60 tttttcagcatccacctaactttagcttcacttgccagatttgttagggcaagagagaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttttcagcatccacctaactttagcttcacttgccagatttgttagggcaagagagaag 323
Query: 120 agaccatttacagctcagtaaacaatgcagaagggcgtgggttgtgtgtgtgtgggggat 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 322 agaccatttacagctcagtaaacaatgcagaagggcgtgggttgtgtgtgtgggggggat 263
Query: 180 ggggacagaaagagtgtaagagccagaaagccagcagtcagctgtaaacaacctctccta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggggacagaaagagtgtaagagccagaaagccagcagtcagctgtaaacaacctctccta 203
Query: 240 gaaacagctgcaaatacaagaccagaacaatggtaatatcaatgagcatgttaacatgga 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 202 gaaacagctgcaaatacaagaccagaacaatggtaatatcaatgagcatgttaacacgga 143
Query: 300 agggggaaattccctctcctagaaaaagaactacaggaatcattgtctcctgggagaagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 agggggaaattccctctcctagaaaaagaactacaggaatcattgtctcctgggagaagg 83
Query: 360 agaattaacctattccaggaatgagcctccttattggt 397
|||||||||||| |||||||||||||||||||||||||
Sbjct: 82 agaattaacctactccaggaatgagcctccttattggt 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 798
Length adjustment: 9
Effective length of query: 388
Effective length of database: 789
Effective search space: 306132
Effective search space used: 306132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
