BAC Information

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BAC

Clone NameMSMg01-354L17
Chromosome15 (Build37)
Map Location 20,746,230 - 20,746,599
singlet/doubletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L17.T7 (MSMg01no354_l17.b1)MSMg01-354L17.TJ (MSMg01no354_l17.g1)
ACCAG465289AG465290
length761815
length of high quality
(start - end)		477 (45 - 521)72 (75 - 146)
definitionCHROMAT_FILE: MSMg01no354_l17.b1 PHD_FILE: MSMg01no354_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:58 2005CHROMAT_FILE: MSMg01no354_l17.g1 PHD_FILE: MSMg01no354_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAAAAATAGCCACAAAACAAGATCATCTAACTTACACACAAAAG
ACCAATAATGTAAAATTAAAAAGTACCCTAACACAACATTAGAAAACAAA
GAGTTTCCAAAGATGACATTGACATTGTTTTGTATTGGGCATCTTCTCTT
AGGTATCAGGTCTATGGTATAGCTGTCCCCTAAGAGGTTATGCTAGAGTC
TGACCAATACAGATGTGGATGCACACAGCCAACTATCACACTGAGCATGG
GGACCCCAATGGAGGAGTTAGGAGAAGAACTGGGGAGCTGGGGGGATTTG
CAACCCCATAGGAAGAACAACAACATCAAACAACCAGATCCCCAAAGCTC
CCAGGGACTAAAACACCAACCAAAGTTTACACATAGAAGGATCCATGGCT
TCAGCTGCATATGGATCAGAGGATGGCCCTGTCTGGCATCAATGGGAGGG
GAGCTTCTTGATCCTGTAAAGNCTCAATGACCCAGTATAAGAGAATGCTA
GAGTGCTGAGGAGAGAGAGCGGGTGAGTGGATGGTTAAGCATCCTTTCAT
GATCCCTCAGGTGTTNNATGGNNCTTGTGTGTGANNAAGTTTGTATTTCC
TTTCGTTANATTCCCGTNNACTCTTGTTTACTTTTTTGTGTGTNCCTACT
GCTAATTCCCTTTNNATTTGATTNNCTAACCTTTCATGTTGNCCCTGGTT
GTTTTTTTTGC

NCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTTATTTTGTTATTTTATTTTCCT
TATTATTGTGGAAGAGGGTGTGGTAGGGGTGATAGAGGTGTGCGTGTGNG
NGNNNNNNNNNNNNNNNNNNNNGGGGNGNGCGNNGNNNGGGGNGGNGGGG
CCCCCCCCGCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTCCCCCCCCCTTCCCCCCCCCCCTCCTCCCCTCCCCCCCCTTT
CCCCCCCCCCCCCCCCCCTCCCCCTTTCTTTCCTCCCCCCCTCCCCTCCC
CCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCT
TCCCCCCCCCCCTCTCCTCCCCCCCCCCCCTTCCCCCCTCCTCCCCCCCC
CCCCCTCCCCCCCCCCTTCCCCCCCCCCCCCTCCCCCCCCTTCCCCCCCC
CCCCCCCCCCCCCCCCCTTCTCCCCCCCCCCTCCCCCCCCCCCCCCCCCC
CCCCCCCCTCCTCCTCCCCCTCCCCCCCCCCCCCCCTCTCCCTTCCCCCC
CCCCCCCCCCCTCCCCCCTCCTCCCCCCCCTCCTTCCCCCCCCTCCCCCC
TCTCCCCCTCCCCCCCCCCTCCCCCCCCCCCTCCCTCTCCCCCCTCCCTC
CCCTCCCCCCTCCCCCTCCCCTCTCCCCCCTCCCCCCTTCCCCTCTCTCC
CCCCCCCCCCTCCCCCCCCCCTCTCTTCCCCCCCTCCTCTCCCCTCCTCC
TCCTCTTCCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l17.b1 MSMg01no354_l17.b1 CHROMAT_FILE:
MSMg01no354_l17.b1 PHD_FILE: MSMg01no354_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:58 2005
         (477 letters)



>mm_chr15_20746230_20747106
          Length = 877

 Score =  685 bits (354), Expect = 0.0
 Identities = 366/370 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataaaaatagccacaaaacaagatcatctaacttacacacaaaagaccaataa 64
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 370 gaattccataaaaatagccacaaaacaagatcatctaccttacgcacaaaagaccaataa 311

                                                                       
Query: 65  tgtaaaattaaaaagtaccctaacacaacattagaaaacaaagagtttccaaagatgaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgtaaaattaaaaagtaccctaacacaacattagaaaacaaagagtttccaaagatgaca 251

                                                                       
Query: 125 ttgacattgttttgtattgggcatcttctcttaggtatcaggtctatggtatagctgtcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttgacattgttttgtattgggcatcttctcttaggtatcaggtctatggtatagctgtcc 191

                                                                       
Query: 185 cctaagaggttatgctagagtctgaccaatacagatgtggatgcacacagccaactatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cctaagaggttatgctagagtctgaccaatacagatgtggatgcacacagccaactatca 131

                                                                       
Query: 245 cactgagcatggggaccccaatggaggagttaggagaagaactggggagctggggggatt 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 130 cactgagcatggggaccccaatggaggagttaggagaagaactgaggagctggggggatt 71

                                                                       
Query: 305 tgcaaccccataggaagaacaacaacatcaaacaaccagatccccaaagctcccagggac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  tgcaaccccataggaagaacaacaacatcaaacaaccagatccccaaagctcccagggac 11

                     
Query: 365 taaaacacca 374
           |||| |||||
Sbjct: 10  taaaccacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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