Query= MSMg01no354_o21.b1 MSMg01no354_o21.b1 CHROMAT_FILE:
MSMg01no354_o21.b1 PHD_FILE: MSMg01no354_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:14 2005
(442 letters)
>mm_chr15_27653774_27654615
Length = 842
Score = 679 bits (351), Expect = 0.0
Identities = 398/425 (93%), Gaps = 20/425 (4%)
Strand = Plus / Plus
Query: 5 gaattctcccattggacctcagaagactgatgggggaggggtgttctcaggcacctctcc 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattctcccattggacctcagaagactgacgggggaggggtgttctcaggcacctctcc 264
Query: 65 tcctgcctccaatcctgaccctggatactggcccctgtgactgtgaggtgttctttgaaa 124
||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 tcctgcctccaatcctgaccctggatactggcccctg------------------tgaaa 306
Query: 125 gcacggattttgtgatag-tctgtatcactgttgcacagaaagggatacagtaactgagg 183
|||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 307 gcacggattttgtgatagct-tgtatcactgtcgcacagaatgggatacagtaactgagg 365
Query: 184 tggctcaaggaaaacttgtgggaagaggaggtgcctcagagaaaccaggtcaggccacag 243
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggctcaagggaaacttgtgggaagaggaggtgcctcagagaaaccaggtcaggccacag 425
Query: 244 ttcaggcaagtgaaggtggggtctgctcaccgctcctttatgcctcctgtttgtctgctc 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcaggcaagtgagggtggggtctgctcaccgctcctttatgcctcctgtttgtctgctc 485
Query: 304 agccgtaaaaactgaaacaggaaatcgaggtcctctgacttcctgtcttctttggtgagc 363
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agccataaaaactgaaacaggaaatcgaggtcctctgacttcctgtcttctttggtgagc 545
Query: 364 tctggcgaaaatccattgtgtaggagggtcttgtactacaagatggttttcgtgtttgaa 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 546 tctggcgaaaatccattgtgtaggagggtcttgtactacaagatggtttccgtgtttgaa 605
Query: 424 aaaaa 428
|||||
Sbjct: 606 aaaaa 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_o21.g1 MSMg01no354_o21.g1 CHROMAT_FILE:
MSMg01no354_o21.g1 PHD_FILE: MSMg01no354_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:14 2005
(491 letters)
>mm_chr15_27810368_27811257
Length = 890
Score = 855 bits (442), Expect = 0.0
Identities = 475/486 (97%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 1 ttttatttattaggctagtctgtggctttcactttagagttggagaacaacagcccttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttttatttattaggctagtctgtggctttcactttagagttggagaacaacagcccttct 426
Query: 61 gaggtttctgcagtgacaggcctggcatttggtttgtctatttccagttttgttgtgtgc 120
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 425 gaggtttctgcagtgacaggcctggcatttggcttgtctgtttccagttttgttgtgtgc 366
Query: 121 tggggaggctggaaccatgtgtggagggtgctcagagcacaggatctgttcgagtgtcag 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 365 tggggaggctggaaccatgtgtggagggtgctcagagcacaggatctgtt-gagtgtcgg 307
Query: 181 ctgtgactgactggcaaaaggactctttgatctggaaagtcacacaagtgcagttgtgga 240
||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 306 ctgacactgaccggcaaaaggactctttgatctggaaagtcacacatgtgcagttgtgga 247
Query: 241 caatgtaagggaatggaggaaagctgctttcagaagaagtcatctgagtcagaagtggtg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 caatgtaaaggaatggaggaaagctgctttcagaagaagtcatctgagtcagaagtggtg 187
Query: 301 gctcaggcctttaggcaggcgatctcgttgagttccaggtcagctttatctagttcgagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gctcaggcctttaggcaggcgatctcgttgagttccaggtcagctttatctagttcgagg 127
Query: 361 acgcaagggctaaccgagaaaccctgccccaaacaaacaaaaacaaataccttcacatag 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 acgccagggctaaccgagaaaccctgccccaaacaaacaaaaacaaataccttcacatag 67
Query: 421 ggacacataaaagaggccatccaagttgtacaaatccaaattcagacagattatggtcac 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ggacacataaaataggccatccaagttgtacaaatccaaattcagacagattatggtcac 7
Query: 481 tgtagt 486
||||||
Sbjct: 6 tgtagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
