BAC Information

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BAC

Clone NameMSMg01-355K09
Chromosome15 (Build37)
Map Location 95,409,819 - 95,409,919
singlet/doubletsinglet
Overlap genenone
Upstream geneTwf1, Tmem117, LOC100043315, Nell2
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355K09.T7 (MSMg01no355_k09.b1)MSMg01-355K09.TJ (MSMg01no355_k09.g1)
ACCAG465986AG465987
length751766
length of high quality
(start - end)		588 (44 - 631)456 (75 - 530)
definitionCHROMAT_FILE: MSMg01no355_k09.b1 PHD_FILE: MSMg01no355_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:09 2005CHROMAT_FILE: MSMg01no355_k09.g1 PHD_FILE: MSMg01no355_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGAATGTTTTAGGTTAGGAGCTTTTTGCATTTTGCATTTTCTTTGA
TTTTTATGTCAGTATTTTCTATGGCATCTTCTGCACCTGAGATTCTCTCT
TCTATCTCTTGTATTCTGTTGGTGATGCTTGCATCTATGACTCCTGACCT
CTTTCCTAGGCTTTCTATCTCCAGGGTTGTCTCCCGTTGTGATTTCTTTA
TTGTTTCTATTTCCATTTTTAGATCCTGGATGGTCTTATTCAATTCCTTC
ACCTGTTTGGTTGTGTTTTCCTGCAATTCCTTATGGGTTTTTTGTGTTTC
CTCTTTAAGGGCTTTAAGCTGTTTAGCAGTGTTCTCCTGTATTTCTTTAA
GGGAATTATTTATGTCCTTCTTAAAGTCCTATATCATCACCATGAGATGT
GATTTTTAAATCAGAGTCTTGCTTTTATGGTGTATTGGGGTATCCAGGGC
TCAGTGTGTTGGGGAAACTGGTTTCTGATGATGCCAAGTAGCCTTGTTTT
TTGTTGCTTATGTTCCTGTCCTTGCCTTTTGCCATCTGGTTATCTAGTGT
TAGCTCGTCTTGCTGTCTCTGACTCTGACTCGTCCCTCCTGCGAGCCCGT
GTGTTACTACTCCTCAGACACCAGTTTTCTCCTGGAGGAATTTGTGTATG
GACAGCTGTGACACATGGTCATCTCTAGAGTACCAATGTTAACCACAATG
N

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGTTTCGTTCCATCAGTGGTGCCG
AGACTCAGATTCTCTGTCCTGGTGCACCTGCACCCGTCAGTGTGGGGTAA
ACCCACGGGCCGGGACCCTATCCTGACAAGTCCGCCTGCTACACGGGTTC
ACTGTCCAGCCATTGGATCACTAGATCGCTGCATTCAACTCTGGCTGATT
GGTGAGTTTCGCCTCCTGGTCTGTGTAAACTCCCCCTTGGACCAGAGGAA
TCCACCATTGAGCTCCTGTTTGTCCCTCTGGTGTCCTTTGGGACTGAGAG
CCGCCCCCCCTGCCCCCGACACAGTCTTCACAGCCAAGGCTGGCCCTTCT
CTCTAAGACCCCCACCGTGGGACCTCTTCCCCTCCCTTCCGTGCCATCAC
ACCTCACCCACTTCCCCTAAATGGCAGGGCCCCTTCAAGGTAATTCTCAT
GACCCCCACAGCTGCTAAGCTTGAGGGCCTCTCTCGTTGGGTTCACCCTG
CGCCATGGAACTTCAGAAGACATCTAAACCTTGCCCTCAATTTCCTCAAT
TCTGTAAGAATGAGGCTTCATTTCTGTAACCGTGCTCAGCCCTACTGATC
TTGGATTTCCCCTCTCCCCCTCCTGGCCATTTTTTTTTACTATAAACCTT
CCTGCAGAAAATTTAATGTCAAAAAACTTTGTGGATAATAAAATTCTTCC
CCATACACACATAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_k09.g1 MSMg01no355_k09.g1 CHROMAT_FILE:
MSMg01no355_k09.g1 PHD_FILE: MSMg01no355_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:09 2005
         (456 letters)



>mm_chr15_95409264_95410119
          Length = 856

 Score =  172 bits (89), Expect = 4e-47
 Identities = 98/101 (97%)
 Strand = Plus / Plus

                                                                       
Query: 356 ccctcccttccgtgccatcacacctcacccacttcccctaaatggcagggccccttcaag 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccctcccttccgtgccatcacacctcacccacttcccctaaatggcagggccccttcaag 615

                                                    
Query: 416 gtaattctcatgacccccacagctgctaagcttgagggcct 456
           |||||||| ||||||||||| | ||||||||||||||||||
Sbjct: 616 gtaattctaatgacccccacggatgctaagcttgagggcct 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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