Query= MSMg01no355_m04.b1 MSMg01no355_m04.b1 CHROMAT_FILE:
MSMg01no355_m04.b1 PHD_FILE: MSMg01no355_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:18 2005
(550 letters)
>mm_chr15_25726574_25727523
Length = 950
Score = 843 bits (436), Expect = 0.0
Identities = 469/480 (97%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 1 tggttcacacactgggtcctagaacttgagaggcggagacaggagaagactgtcctaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 779 tggttcacacactgggtcctagaacttgagaggcggagacaggagaagactgtccaaact 720
Query: 61 ttgacaccagtctggacgaacatagtctcaaaaaataaaacacaagaagaaaagctatcc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttgacaccagtctggacgaacgtagtctcaaaaaataaaacacaagaagaaaagctatcc 660
Query: 121 caagcagatcgtccacacagacaccacccccttctgctttgcagcgtttgcaaatggatg 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 659 caagcagatcgtccacacagaaaccacccccttctgctttgcagcgtttgcaaatggatg 600
Query: 181 gttaaagtctggcttctcatttaccttagcaagccaaagtcagcctgctagaggacttta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 599 gttaaagtctggcttctcatttaccttagcaagccaaagtcagcctgctagaggacgtta 540
Query: 241 gatgag-tgtttgtcagggcttcatacatagcctagagaagggggcagtggcaaggccag 299
|||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gatgaggtggttgccagggcttcatacatagcctagagaagggggcagtggcaaggccag 480
Query: 300 aggccaccatgttctctctttgaagtgccataattggagcttacctatcagggctgtcag 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 479 aggccaccatgttctctctttgaagtgccata-ttggagcttacctatcagggctgtcag 421
Query: 360 aggcgcatacagaatcaatcagcccgacatccagtgtgccctgcaaagggacaaaaagga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aggcgcatacagaatcaatcagcccgacatccagtgtgccctgcaaagggacaaaaagga 361
Query: 420 cagaaagggtgacaaaggagccagaagagcatgacctcacacagcatcaccagactgtaa 479
||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 360 cagaaagggtgacgaaggagccagaagagcatgacctcacacggcatcaccggactgtaa 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_m04.g1 MSMg01no355_m04.g1 CHROMAT_FILE:
MSMg01no355_m04.g1 PHD_FILE: MSMg01no355_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:18 2005
(386 letters)
>mm_chr15_25560757_25561542
Length = 786
Score = 654 bits (338), Expect = 0.0
Identities = 383/418 (91%), Gaps = 32/418 (7%)
Strand = Plus / Plus
Query: 1 tttatatagcctccttttaattttctttcctttgcgttgtactatcttcagagataacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tttatatagcctccttttaattttctttcctttgcgttgtactatcttcagagataacca 228
Query: 61 tgggcaagagttgttttgtgactgcagttttcatttggggacttaaagaatcatgatgag 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgggcaagagttgttttgtgattgcagttttcatttggggacttaaagaatcatgatgag 288
Query: 121 tgtgtgtgtgt------------------------gca--------tgtgttggaagacc 148
||||||||||| ||| ||||||||||||||
Sbjct: 289 tgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcacgtgtgcgtgtgttggaagacc 348
Query: 149 taagtgtgtttaagttcattatttattaactcagaaagtcttcctacggactctgaaatc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taagtgtgtttaagttcattatttattaactcagaaagtcttcctacggactctgaaatc 408
Query: 209 aaagtgttgagacatcctccatctaacagaggtgccattgtctttcctgaggctcagctc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaagtgttgagacatcctccatctaacagaggtgccattgtctttcctgaggctcagctc 468
Query: 269 ctgttcatttccgcccacatttggttgtacagatgtgaccgcagaggactcggcagggtg 328
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 469 ctgttcatttccgcccacatttggttgtacagatgtgaccgcagaggactcagcagggtg 528
Query: 329 aaggtggaagaagcaactccttatccttcaccttgactggcctctgtttactgttgcg 386
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 529 aaggtggaagaagcaactccttagccttcaccttgactggcctctgtttactgttgcg 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
