BAC Information

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BAC

Clone NameMSMg01-357G18
Chromosome15 (Build37)
Map Location 16,396,963 - 16,397,434
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357G18.T7 (MSMg01no357_g18.b1)MSMg01-357G18.TJ (MSMg01no357_g18.g1)
ACCAG467327AG467328
length770773
length of high quality
(start - end)
501 (40 - 540)478 (70 - 547)
definitionCHROMAT_FILE: MSMg01no357_g18.b1 PHD_FILE: MSMg01no357_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:24 2005CHROMAT_FILE: MSMg01no357_g18.g1 PHD_FILE: MSMg01no357_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAATTGATGAATACAGAGTGTCTGAGAAGCACCTAAAGAAATGTTCAAAT
ATGCCTTCAAATATGCTGTGTTAAATAAATGGTCTTCCTAAAAAAATTAA
AAAATTAAAAAAAAAAGAAATGTTCAACATCCTTAATCATCAGGGAAATG
TACATCAAAATATCCCAGAGATTCCGCCTCACACCAGTCAGAATGGCTAA
GATCAAAAACTCAGGTGACAGATGCAGGAGAAGTTGTGGAGAAGTAGGAA
CACTCCTCCATTGCTGGTGGTATTGCTAGCTGGTAAATCACTTTGGTAAT
CATTTTTGTTTTTGTTTTTTTTTAAATAAAATGCTACGTGCATGTAAACT
ACATAGTATGAAGTGATGCTTGTGTATATTTACCCAAGATAAATATCAAT
TTATCATCTCATGTATATATGTAAAATTTACATTTTTATTAATAGTAAGA
TTATAAGTGGATACAAACCCTTTGGAAATAAATCTGGAAATGCTTTAGAA
AATTGGTAATAGTTCTACCTGAAAACCCAGCTATATCAGTCCTGGGCAGA
TACCCAAATGATGTTCTACCATATCACAAAGAAACATGTTCCACTAAAGT
CATAGAAGAATTATTTATATCAGCCTAATCTGGAACCACCCCAAAGGCTT
TTTAAACAAAAAGGGAACCAAAAAATGGTCCTTTTTTCCCAAAAAAATAT
TCTGCTTTTGAAAGGAGAAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTAAACTTTGATTTTTTTAATGTTCTAATC
ACTGACATTGCGTCTAAAGACAGTTTCTGCTAACTTATTTTTAAACCATA
ATTTATGTACAGCAATATCATTTGAATATTAAATGACAACATAATATATT
GATTTGATAGTGTTAAACTAGCAATAAAAAGAGGTGGGGCATTATAGACT
ATAAATTATGACATGATGAAACTTTGTTTATGTGTGACTTTTATTATCTC
TAATTTTAAGGACATACTCATTTTAACCCTCTATTCAGTGGTTAAATTTA
ATATTTTAAAATAAATCTCATAAAACATATCTTTAAATATTATAGTGAAT
TACTTCCACTTTACCTATTTTACCTGTTTCTTTTCAATTTTAATGGGTTG
AACATGTCTTAATGAAATTTGAACTTTACTGCTAAATGAAATAGCATTGA
TATTAATGTATATTCATATCAACATATATAGTATCATGCTTGCTCTGTAC
TAAGACTTATAAGTTTTAACACTGTTTTTAAGTGACTTATACCTAAGAAA
CCAACTGTTTCCTTAATTTAAAAATTTTCTTTAATTAAATTTGAATAATT
TTAAGCCTAAAAAATAACAGGGAACCGCCCACGGTGAAGCCCCCCTTATT
CCCACCCCCTCGAAGCGAAAAAAAGGGGTTTTTTTATTCTAAGCCCCCCC
CCCCCTATAAAGAGTTTAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_g18.g1 MSMg01no357_g18.g1 CHROMAT_FILE:
MSMg01no357_g18.g1 PHD_FILE: MSMg01no357_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:25 2005
         (478 letters)



>mm_chr15_16396963_16397840
          Length = 878

 Score =  835 bits (432), Expect = 0.0
 Identities = 462/472 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaactttgatttttttaatgttctaatcactgacattgcgtctaaagacagtttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tttaaactttgatttttttaatgttctaatcactgacattgcgtctaaagacagtttctg 413

                                                                       
Query: 61  ctaacttatttttaaaccataatttatgtacagcaatatcatttgaatattaaatgacaa 120
           ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 412 ctaacctatttttaaaccataatttatttacagcaatatcatttaaatattaaatgacaa 353

                                                                       
Query: 121 cataatatattgatttgatagtgttaaactagcaataaaaagaggtggggcattatagac 180
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 352 cataataaattgatttgatagtgttaaactagcaataaaaagaggtggggtattatagac 293

                                                                       
Query: 181 tataaattatgacatgatgaaactttgtttatgtgtgacttttattatctctaattttaa 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tataaattatgacattatgaaactttgtttatgtgtgacttttattatctctaattttaa 233

                                                                       
Query: 241 ggacatactcattttaaccctctattcagtggttaaatttaatattttaaaataaatctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ggacatactcattttaaccctctattcagtggttaaatttaatattttaaaataaatctc 173

                                                                       
Query: 301 ataaaacatatctttaaatattatagtgaattacttccactttacctattttacctgttt 360
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 172 ataaaacatatctttaaatattattgtgaattacttccactttacctattttacctattt 113

                                                                       
Query: 361 cttttcaattttaatgggttgaacatgtcttaatgaaatttgaactttactgctaaatga 420
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 112 cttttcaattttaatgggctgaacatgacttaatgaaatttgaactttactgctaaatga 53

                                                               
Query: 421 aatagcattgatattaatgtatattcatatcaacatatatagtatcatgctt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  aatagcattgatattaatgtatattcatatcaacatatatagtatcatgctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)