BAC Information

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BAC

Clone NameMSMg01-357J21
Chromosome15 (Build37)
Map Location 19,765,239 - 19,765,671
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh10, EG666857, EG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357J21.T7 (MSMg01no357_j21.b1)MSMg01-357J21.TJ (MSMg01no357_j21.g1)
ACCAG467472AG467473
length773774
length of high quality
(start - end)
478 (41 - 518)433 (72 - 504)
definitionCHROMAT_FILE: MSMg01no357_j21.b1 PHD_FILE: MSMg01no357_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:40 2005CHROMAT_FILE: MSMg01no357_j21.g1 PHD_FILE: MSMg01no357_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGTTTATCTCTTTATTCCACTTTTTAATAGGATTATTTGGTTCTCTGG
AGTCTAACTTCTTGAGTTCTTTGTATATTTTGGATATTAGCCTTCTTTCA
GATGTAGGGTTGGTAAAGGTATTTTCCCAATCAGTGTATTGCTGTTCTGT
CCTATTGATAGTATCTATTGTCTTATTGCTGATGCCAAGAAGTGCTTAGT
GATAGGAGTCCAGTATAGCTGTTCCCAGAGAGGATCTGCCAGAGCCAGAA
CAATACAGATGCAGATGTACACAGCCAGATATTGTACCCAACACAGGGAC
CCAAAAGGTCAAGTTAGGGCAAGGACTGTAGTAGCTAAACCAGTTTGCAA
CATCAAAGGAAGAATAACAATATCAACCAACCAGACCGCACAAATGCCCC
AGGGACTAAACTACCAGCCAAAGAATACAGAGGGGTTATCCATGGATCCA
GCTGGATATGTAGCAGAGGATTACCCTATCTGGCATAACTGGGAGGGGAG
CTCCTTGCTCCTTGATGTCCCAGCATACAGGAATGCTAAGCTACCTAAGC
AGGTGGTGGTGGGGTTGTTTGGTAACATCCCTCCAAAAGCAGGTGGAAGG
ACTATGAACATTTTTATTTCTCTTTTCTAACTTTCTACGTCTTCGTATCG
TTCTTGTTCGTTTTTCACTTTCCTTTTCTTACTGAACAATATCCTTTTTT
TATCTCTCCCCTTATTTACATTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTGAAAGCACGTTACCTCCCAGGGTGT
TTTAAAGGAAGACTCCTTTAAAATACCCCATAGACTTCGGGAGTCCCTAA
AACACAGAAACTTACAAGGATCCCTTCTCTCCAAAATTATATAAACAGCA
CGGTATACTGCACAGGAGACTCTGTTTTGCTGACTCCAGATTGAGCAGGT
AGTCCGAGTGCTCCTGCTTTTTCATTTTTTTCATTTCCCTTGCTGAGTTT
ATCCTGTTAAATATTGTACCTTGCGAAGTAAGCGAATTTATACTTACACT
TTCTCCTTCTATTAATGAATTCTTTTTATTAACATTAATTACTACATCCT
CTGCTTTTGACTGATCTATGATCCTCTAACCAATCCCGTATGCCTACTTG
CAAAGGTAAATCCAGTAAACTCATTGATTGTCCCAACAGGTCTTTGCTGG
ACAGCCTTGCTCAGCATTGAGTTCTCTAGTCAGGTAAGTGGGGATTGGTT
CACATCTCTGCCGAAGTAGCAACATACAGTAATGATGCGGGGCCCGACCT
TGATGAGGGTCTTGGAAAGGAAATTCTGATCCAAGTGGTTACGCCACAAG
ACTTTTATAGGGAGAGGGAACTTTCTAAGGTCCCCTCTTTCTCTCGCAAA
TCAAACCTTAATCCTACCCCAATTGGTGGTGTGTCAAAAAAATTTCTTCC
CCCCCCCCCTATTATTTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_j21.g1 MSMg01no357_j21.g1 CHROMAT_FILE:
MSMg01no357_j21.g1 PHD_FILE: MSMg01no357_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:40 2005
         (433 letters)



>mm_chr15_19765039_19765871
          Length = 833

 Score =  806 bits (417), Expect = 0.0
 Identities = 429/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgaaagcacgttacctcccagggtgttttaaaggaagactcctttaaaataccccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgaaagcacgttacctcccagggtgttttaaaggaagactcctttaaaataccccat 260

                                                                       
Query: 61  agacttcgggagtccctaaaacacagaaacttacaaggatcccttctctccaaaattata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacttcgggagtccctaaaacacagaaacttacaaggatcccttctctccaaaattata 320

                                                                       
Query: 121 taaacagcacggtatactgcacaggagactctgttttgctgactccagattgagcaggta 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacagcacggtatgctgcacaggagactctgttttgctgactccagattgagcaggta 380

                                                                       
Query: 181 gtccgagtgctcctgctttttcatttttttcatttcccttgctgagtttatcctgttaaa 240
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccgagtattcctgctttttcatttttttcatttcccttgctgagtttatcctgttaaa 440

                                                                       
Query: 241 tattgtaccttgcgaagtaagcgaatttatacttacactttctccttctattaatgaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tattgtaccttgcgaagtaagcgaatttatacttacactttctccttctatcaatgaatt 500

                                                                       
Query: 301 ctttttattaacattaattactacatcctctgcttttgactgatctatgatcctctaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttttattaacattaattactacatcctctgcttttgactgatctatgatcctctaacc 560

                                                                       
Query: 361 aatcccgtatgcctacttgcaaaggtaaatccagtaaactcattgattgtcccaacaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcccgtatgcctacttgcaaaggtaaatccagtaaactcattgattgtcccaacaggt 620

                        
Query: 421 ctttgctggacag 433
           |||||||||||||
Sbjct: 621 ctttgctggacag 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)