Query= MSMg01no357_k23.b1 MSMg01no357_k23.b1 CHROMAT_FILE:
MSMg01no357_k23.b1 PHD_FILE: MSMg01no357_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:45 2005
(537 letters)
>mm_chr15_35506075_35507010
Length = 936
Score = 982 bits (508), Expect = 0.0
Identities = 523/528 (99%), Gaps = 1/528 (0%)
Strand = Plus / Minus
Query: 10 cctacatgtgtacacacattcctgtttctcgcgccttctcttaggatattttccttctct 69
|||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 936 cctacatgtgcaaacacattcctgtttctcgcgccttctcttaggatcttttccttctct 877
Query: 70 tggttttgtctaactgcaaagtgttagtctttattttattttaaagtattgactcttaag 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tggttttgtctaactgcaaagtgttagtctttattttattttaaagtattgactcttaag 817
Query: 130 agaactgtttattttctaatgaaagacagaatgaaagtggatccaggcaggaagtgtaga 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 agaactgtttattttctaatgaaagacagaatgaaagtggatccaggcaggaagtgtaga 757
Query: 190 tggaggaaacaataagaagtacatattatgtgaggaaaatcaattttcaatttaagaaaa 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 756 tggaggaaacaataagaagtacatattatgtgaggaaaatcaattttcaatttaag-aaa 698
Query: 250 aaaagcaaacactggaaatcaaaaaatattaagccaaattttaagttaaaaaggtgtatt 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aaaagcaaacactggaaatcaaaaaatattaagccaaattttaagttaaaaaggtgtatt 638
Query: 310 ctcaagaaaaggaacattattgtaagttcccaagagaggcataagtgatggccatcagag 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctcaagaaaaggaacattattgtaagttcccaagagaggcataagtgatggccatcagag 578
Query: 370 agagaagatgcataattcactaagagcacattatgcccatggtgtgtttacgaaatataa 429
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 577 agagaagatgcataattcactaagagcacattatgcccatggtgtgtttaccaaatataa 518
Query: 430 atatgcaagtatacatagataacatctgagggttctaaagctgggaagaactaaagacag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atatgcaagtatacatagataacatctgagggttctaaagctgggaagaactaaagacag 458
Query: 490 aaaatttcccctaagacaaaaataataccacagcatgcaacaataatt 537
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaaatttcccctaagacaaaaataataccacagcatgcaacaataatt 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_k23.g1 MSMg01no357_k23.g1 CHROMAT_FILE:
MSMg01no357_k23.g1 PHD_FILE: MSMg01no357_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:45 2005
(387 letters)
>mm_chr15_35298984_35299770
Length = 787
Score = 667 bits (345), Expect = 0.0
Identities = 368/387 (95%), Gaps = 18/387 (4%)
Strand = Plus / Plus
Query: 1 tgttcctgttttattctatttcttctttggaggtgatccacttaactcacgaaacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tgttcctgttttattctatttcttctttggaggtgatccacttaactcacgaaacacaca 278
Query: 61 cacacacacacacacacacacacacacacacacacacgcgcacacacacacaagcttgaa 120
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 279 cacacacacacacacacacaca------------------cacacacacacaagcttgaa 320
Query: 121 acagagaactttctccacttgctaacataggtctacaaaaatcctacagctaatagtata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagagaactttctccacttgctaacataggtctacaaaaatcctacagctaatagtata 380
Query: 181 tttaatggtgagaaagtttctgctaagcagcctgttctgagctagattgagacctacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatggtgagaaagtttctgctaagcagcctgttctgagctagattgagacctacttc 440
Query: 241 tgtagatttactgtctacccaatttgcctcatggtctttcagaagagacttcaaaaatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagatttactgtctacccaatttgcctcatggtctttcagaagagacttcaaaaatat 500
Query: 301 attgtgtttatgtatattgccttaaaaaagatgtgagaggtttggagagatggctcagtg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtgtttatgtatattgccttagaaaagatgtgagaggtttggagagatggctcagtg 560
Query: 361 gttaagagcattgactgctcttctgaa 387
|||||||||||||||||||||||||||
Sbjct: 561 gttaagagcattgactgctcttctgaa 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
