Query= MSMg01no357_n15.b1 MSMg01no357_n15.b1 CHROMAT_FILE:
MSMg01no357_n15.b1 PHD_FILE: MSMg01no357_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:57 2005
(449 letters)
>mm_chr15_32354208_32355056
Length = 849
Score = 826 bits (427), Expect = 0.0
Identities = 445/453 (98%), Gaps = 4/453 (0%)
Strand = Plus / Plus
Query: 1 ttctgtgcatgtcatacaaatttcaacaacacttttttcccttctggtatttggatggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttctgtgcatgtcatacaaatttcaacaacacttttttcccttctggtatttggatggct 256
Query: 61 gcattctttactctatctatatctacatctatatctatatcacctatatagatagataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcattctttactctatctatatctacatctatatctatatcacctatatagatagataga 316
Query: 121 ta----tagtaaaaatatattttttgatcttattatccctcctacaacttttccaagaac 176
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 317 tagatatagtaaaaatatattttttgatcttattttccctcctacaacttttccaagaac 376
Query: 177 ttccctatacaccgaacttcatgttctttgtgtctttcaaacacaaaagtaagaataaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttccctatacaccgaacttcatgttctttgtgtctttcaaacacaaaagtaagaataaaa 436
Query: 237 gcaaataaacaacagcaacaacaacaacaaataacatgaaaaagaccaaaacatgactgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcaaataaacaacagcaacaacaacaacaaataacatgaaaaagaccaaaacatgactgg 496
Query: 297 agtcttaccattatcatatggagtcaagtcatggctagttttagctttccttatagaatc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtcttaccattatcatatggagtcaagtcatggctagttttagctttccttatagaatc 556
Query: 357 aaatgatcttgagtgcacgagaggggctgaaacagatgactttgagaatccacgcaatgt 416
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 aaatgatcttgagtgcaggagaggggctgaaacagatgactttgagaatccatgcaatgt 616
Query: 417 tatacaattttcatacccctaaaattgataggc 449
|||||||||||||||||||||| ||||||||||
Sbjct: 617 tatacaattttcatacccctaagattgataggc 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_n15.g1 MSMg01no357_n15.g1 CHROMAT_FILE:
MSMg01no357_n15.g1 PHD_FILE: MSMg01no357_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:58 2005
(519 letters)
>mm_chr15_32552473_32553392
Length = 920
Score = 909 bits (470), Expect = 0.0
Identities = 508/521 (97%), Gaps = 3/521 (0%)
Strand = Plus / Minus
Query: 1 tcttcct-aatatacacgcaaagaaatgggttaataacaatggcaacagaaaaggagcga 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tcttcctaaatatacacgcaaagaaatgggttaataacaatggcaacagaaaaggagcga 661
Query: 60 aggggttactcggcatgcgtgacagcaaataanacgcacagaagtcgttttcataagcca 119
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 660 aggggttactcagcatgcgtgacagcaaataaaacgcacagaagtcgttttcataagcca 601
Query: 120 gtggaagaggaaggaacgccattgagcagccactggttggaacacacacaagataagaat 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 600 gtggaagaggaaggaacgccattgagcagccactggttggaacacaaacaagataagaat 541
Query: 180 gtggcgacggtgactaatttacaaggaaagaaggtagtttcatttctgtccagcagggag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtggcgacggtgactaatttacaaggaaagaaggtagtttcatttctgtccagcagggag 481
Query: 240 gaagctgcaggtaggagaggcaaccttttcaaatctcgtggaggtttgttagttatgtga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaagctgcaggtaggagaggcaaccttttcaaatctcgtggaggtttgttagttatgtga 421
Query: 300 cattctggaagaacttgcaggcctcaggtaccctaagcagatacttggctcgcataggta 359
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 420 cattctggaagaacttgcaggcctcaggtaccctgagcagatacttggctcgaataggta 361
Query: 360 aggtctgagtcctatctcagtactgggaaagacgaaatgaaagaaagcactttaaactgt 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 360 aggtctgagtcctatctcagtactgggaaagacggaatgaaagaaagcactttaaactgt 301
Query: 420 ccaaagttctctccaggtttctcctacatgattttcttcttgaagcatgtgctttatgct 479
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 300 ccaaagttctctccaggtttctcctatgtgattttcttcttgaagcatgtgctttatact 241
Query: 480 aatacatacaaagtcta-actgaaacgtgcaacacagatca 519
||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 240 aatacatacaaagtc-agactgaaacatgcaacacagatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
