BAC Information

Click to search

BAC

Clone NameMSMg01-358A14
Chromosome15 (Build37)
Map Location 8,231,656 - 8,232,146
singlet/doubletsinglet
Overlap genenone
Upstream geneEgflam, Gdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599
Downstream geneNipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358A14.T7 (MSMg01no358_a14.b1)MSMg01-358A14.TJ (MSMg01no358_a14.g1)
ACCAG467789AG467790
length731735
length of high quality
(start - end)		494 (39 - 532)458 (66 - 523)
definitionCHROMAT_FILE: MSMg01no358_a14.b1 PHD_FILE: MSMg01no358_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:12 2005CHROMAT_FILE: MSMg01no358_a14.g1 PHD_FILE: MSMg01no358_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACTTGTCACTTGGCTTGAGCCCAAGTCACAACCAACACCCATCATGTGTT
CAGGTTTAACTATCAGAGCAATCTGAGTATTTCTTGGTATTCTGATTAGA
AATGTTAAACTGTAGTCAAACAGCTTTATTGCTAAGAAAGCAGGCGTGGG
TAACATATTGTAGCCTAGATCTGTGTTCATCAAACTTGCTGCCAACAGTC
CCAAATCTGTGCTCAGAATGCACCTGCTGAGTACAGCACTCCACACATCC
ACGGGAAAAGGCTCACCTAGTGGGCTTAGCAGGAGAAGCAGCTGCTCCCC
TGTGTCAGTGCCCAGCGAGGGTCCGAGAGAAGCTCAGAACTGCTTCCTCT
GTGATCCGTGGGTCGAACTCGCTCAGGAAATGGGAAACAGTTTATGTTCA
ACTCTTAGCTGGCCCCCAGTCAGAGCTGAAACTGTTCATCACGAGGCAAA
CGACCTGATAGAGATGTGAGGAGGGCTTCTTCTGTTTATTTTCTAGGCAT
AGCGATGTGTTTTCATTTTTAACATTTTGGTTTTGGGGGTGTCGTACATA
AAAATGAGTTTTGTTGTGACATTTTCTTTCCCTTGGTTTTGTTTGGTTGG
TTGGGGNAAGCTCCAAACCCACCAAACCGGGGCAAGGCCGTTTTTGGTCC
AGCACTTTGCGCCCCTTGAAAAAGGGCTTTC

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATACAGGAGAACACTGC
TAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGT
TACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTC
CTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAA
AACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAA
GTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATA
GATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGG
TGCAGAAGACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAA
AATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATG
AGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTNC
ACTCAAAGGACCCAGCAACATCTTTCACAAAAATTATTGAAGAAAACTTC
CCCAATCTAAAAAAAGAGATGCCCTTGAACATACAAGAGGCCTACCGAAC
TCCCCATAGAACTGGACCCAAAAAAAAATTCCTCCCGAACCTTAATATTC
AGAAACCCAATGGCCTTAATAAAAAAAGAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_a14.b1 MSMg01no358_a14.b1 CHROMAT_FILE:
MSMg01no358_a14.b1 PHD_FILE: MSMg01no358_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:12 2005
         (494 letters)



>mm_chr15_8231453_8232346
          Length = 894

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcacttgtcacttggcttgagcccaagtcacaaccaacacccatcatgtgttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggaattctcacttgtcacttggcttgagcccaagtcacaaccaacacccatcatgtgttc 635

                                                                       
Query: 64  aggtttaactatcagagcaatctgagtatttcttggtattctgattagaaatgttaaact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aggtttaactatcagagcaatctgagtatttcttggtattctgattagaaatgttaaact 575

                                                                       
Query: 124 gtagtcaaacagctttattgctaagaaagcaggcgtgggtaacatattgtagcctagatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gtagtcaaacagctttattgctaagaaagcaggcgtgggtaacatattgtagcctagatc 515

                                                                       
Query: 184 tgtgttcatcaaacttgctgccaacagtcccaaatctgtgctcagaatgcacctgctgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgtgttcatcaaacttgctgccaacagtcccaaatctgtgctcagaatgcacctgctgag 455

                                                                       
Query: 244 tacagcactccacacatccacgggaaaaggctcacctagtgggcttagcaggagaagcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tacagcactccacacatccacgggaaaaggctcacctagtgggcttagcaggagaagcag 395

                                                                       
Query: 304 ctgctcccctgtgtcagtgcccagcgagggtccgagagaagctcagaactgcttcctctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgctcccctgtgtcagtgcccagcgagggtccgagagaagctcagaactgcttcctctg 335

                                                                       
Query: 364 tgatccgtgggtcgaactcgctcaggaaatgggaaacagtttatgttcaactcttagctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgatccgtgggtcgaactcgctcaggaaatgggaaacagtttatgttcaactcttagctg 275

                                                                       
Query: 424 gcccccagtcagagctgaaactgttcatcacgaggcaaacgacctgatagagatgtgagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcccccagtcagagctgaaactgttcatcacgaggcaaacgacctgatagagatgtgagg 215

                      
Query: 484 agggcttcttc 494
           |||||||||||
Sbjct: 214 agggcttcttc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |