BAC Information

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BAC

Clone NameMSMg01-358C19
Chromosome15 (Build37)
Map Location 10,751,047 - 10,751,523
singlet/doubletsinglet
Overlap genenone
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358C19.T7 (MSMg01no358_c19.b1)MSMg01-358C19.TJ (MSMg01no358_c19.g1)
ACCAG467893AG467894
length726717
length of high quality
(start - end)
502 (41 - 542)473 (65 - 537)
definitionCHROMAT_FILE: MSMg01no358_c19.b1 PHD_FILE: MSMg01no358_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:22 2005CHROMAT_FILE: MSMg01no358_c19.g1 PHD_FILE: MSMg01no358_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGGAATTCTTAT
CCCCTGCGGGGCCCGCAATCCTTCTTCCTAATGTTCCGTAAGAGCTCCCA
AGCTCTATCCACTGTTTGGCTGTGGTTGTCTGCATCTATCTGAGTCAGCT
GCTGGGTGAAGCCCCTCAGAGGACAGCCATGCTAGACCCCTGTCTTGCAA
GCACAACAGAGTATCATAAATAGTGTCTGGGATTGATGCTTGCCTGAGGG
ATGGGTCTCAAGTTGAGCTGGTTATTGGTTGGCTATACTTTCAATCTACT
TGCATTTTTTGTAGACAGGATAAATTTTGGGTCAAAAGTTTTGTGGGTTG
GTTGGCGTCCCTCTCACTCTACTTGGGTTCCTGCCTGGGTATAGGAAGAG
GCCGCTTCAGGTTCCATATCCTCAATGTTGTGGGTCACAGTTACAGCCCC
CCCCCATTGATCCTTGGGCACCTCCCCTATCCCAGTTCTCTGTCACACCC
TTGAGATGCAACCCACCCAGCTCCCCACCCCCATCAGTTGCAGATTTCCA
TTCATTCTCATGGCCATCTGACCATCTCAGAGCTGATTTTTAAAATCTGT
TCATTCATTGCACTCGACTTACTCTTTGATGACATCCTTGGGCTGAGCTT
TCTTGTCATAGCCCTTAACTGTTTAGCAAAACTGTATTTAAACACCCCTT
ATTGATTTCCTTGCCGGCCTTTTGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAATAGAATAAAGGGGAGATTCCCCCAGGAAATCT
GAGCTGACAGATATAAACAATGAGGAGATTCACTCCAGACTTGGAGCTTT
CAAACCTGGCAGTGGGTGGGAGACCCAAGACTGCCAAAAGGGTTCCCCTT
TGGTTCCATGGCTCCAGTTCTCTCCACCATGGCAGTGGCAGAGAAGCAGT
CACTGAACCATAGGATGGCTTCCACAGGGCCTTCTGAGTCCAGATGTTTG
AAGCAGTGTCTGATAACCTTTTCTTCCTGGGTCACTGCTGTAATCAAGGC
TTGGAACTGTCCAAGCTACTGCACTGGTTGGCTCCTAAATAGACTCAGTA
TTTGATCATGGTAGTGCTCTCCCAGAGTCTGAGGGTGCTCAGTGGTTTGT
TTGTTTAATTTGTTAGATTTACTTATTTTTGTTTTATGTTTGCGGGCATG
CATATCTATATATCTATGCACTTCAGACATACAGTGCCCATGGAGGTCAG
AAGAAAGTACCAGAGCTTTGTGGAACTGGAGTTACAGATGTTTGTGGAGC
CTTCTGTGGGTGCTGGGAATTTGAACCTGGGGGTCCTCTGGAAAAAAAGG
TTAGGGGTTTTTTAACCTTGGGGGCCCTCTTTCTTTTTAAAAGCATAATA
ACCCTTTCCCCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_c19.g1 MSMg01no358_c19.g1 CHROMAT_FILE:
MSMg01no358_c19.g1 PHD_FILE: MSMg01no358_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:22 2005
         (473 letters)



>mm_chr15_10750847_10751723
          Length = 877

 Score =  857 bits (443), Expect = 0.0
 Identities = 467/477 (97%), Gaps = 4/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatagaataaaggggagattcccccaggaaatctgagctgacagatataaacaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatagaataaaggggagattcccccaggaaatctgagctgacagatataaacaatgag 260

                                                                       
Query: 61  gagattcactccagacttggagctttcaaacctggcagtgggtgggagacccaagactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gagattcactccagacttggagctttcaaacctggcagtgggtgggagacccaagcctgc 320

                                                                       
Query: 121 caaaagggttcccctttggttccatggctccagttctctccaccatggcagtggcagaga 180
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 caaaagggttcccttttggttccatggctccagttctctccaccatggcagtggtagaga 380

                                                                       
Query: 181 agcagtcactgaaccataggatggcttccacagggccttctgagtccagatgtttgaagc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagtcactgaaccataggatggcttccacagggccttctgagtccagatgtttgaagc 440

                                                                       
Query: 241 agtgtctgataaccttttcttcctgggtcactgctgtaatcaaggcttggaactgtccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtctgataaccttttcttcctgggtcactgctgtaatcaaggcttggaactgtccaa 500

                                                                       
Query: 301 gctactgcactggttggctcctaaatagactcagtatttgatcatggtagtgctctccca 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gctactgcactggttggctcctaaatagactcagtatttgatcatggtggtgctctccca 560

                                                                       
Query: 361 gagtctgagggtgctcagtggtttgtttgttt----aatttgttagatttacttattttt 416
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 561 gagtctgagggtgctcagtggtttgtttgtttgtttaatttgttagatttacttattttt 620

                                                                    
Query: 417 gttttatgtttgcgggcatgcatatctatatatctatgcacttcagacatacagtgc 473
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 gttttatgtttgcgggcatgcatatctatatacctatgcacttcagacatacagtgc 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 877
Length adjustment: 10
Effective length of query: 463
Effective length of database: 867
Effective search space:   401421
Effective search space used:   401421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)