BAC Information

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BAC

Clone NameMSMg01-358E01
Chromosome15 (Build37)
Map Location 36,899,378 - 36,899,873
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
Downstream geneZfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358E01.T7 (MSMg01no358_e01.b1)MSMg01-358E01.TJ (MSMg01no358_e01.g1)
ACCAG467953AG467954
length742718
length of high quality
(start - end)		447 (50 - 496)499 (62 - 560)
definitionCHROMAT_FILE: MSMg01no358_e01.b1 PHD_FILE: MSMg01no358_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:28 2005CHROMAT_FILE: MSMg01no358_e01.g1 PHD_FILE: MSMg01no358_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTGCGCTAATACGACTCACGTAGTCCAGAGGAGCCGCGGAGTTCGCCGT
GCTTTGGAGGGAGAGAGAGCCACCAGCCATGTGAGTTCTCTGATGGAGTG
GGGGAGCAGGTGGGAGATTAGAAAGGCGACTAAACTATGGGCTGATTTAG
GGTGCTGAGCAAGGAGAAGGTAACTGGGAAACTAAACTGAGGGAAGATTT
ACAGGTGGGAGTGAAGATAAGGGCAGGCTATTCACAGGAGGCTTAGAAGT
GTCTGGCCATTGAGCTTAAAAGTATATTAAAAATAAGCTAGTGTGTGTGT
GTGGGGGGGGGTATCTTTCATCCACAGATCCAAGGGAACCAGGGCTGCCC
GGAGCTTAAAATGGGGTATTAGAAACACTACACACAACAAGAGATATAAC
ACAGAGACCCATAGCTGAACAGTGTGTAGAGAGGGAGAAACTTTGGAGCA
CTCAGTCCTAAAAGGAATGTCTTCATCAAAGCCCTCTTCTCAGGGGCTGG
GGTCAATGTGCAAGAGGAGGTATACCGATTTTTAACAGCCATTTTTGTTC
GATCACCGCAACTTTATTCTTATACAGGCCCCAGCGATTGATATTATGAG
GGTTATAACCCCCCCCGCCCTGTCTCAGTACCACACCATTATAAAATCTC
TGCCCCTACCTTTTGGGAAAAAGCACCCTTTGCCCCCCCATTGTCCTTGT
TTGTCCCGCTAGCTTAGCTTTTCTACTCTCACCCCTTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCAGAGCTTATATTCTGATGAGGATGACACTCTCAAGCA
GGGGGTTGGGGGAAAGCGTCTCCCTCCTCACTGACTTTGTTGTAAGAGGA
GGAATGGTGGTAAGGAAAGTGACTTTTTCAAGTTGAGCCGTTACAATGAG
CTACCCACAAGAAAGATATGTCAGCTTTACAACTTATTCAATTTCACAAC
ACAGGGGAAATAATTGTGTTCTTTTTTGCAACAAGGGAGCTAAGACTCAG
CATTGACACAATTTATCAAGGTCAGTAAATTCACTATATAACTTTAATCC
TGTTTTTATTTTATGTACAGGACTGTCTTGTCTGCATGTATGTATATATA
CCATGTGCATGCAGTGCCCATGGTGGTCAGGAGAGGGCGGTAGATCTTCT
GGAAATGGAATTACAGATGCGCGTGAATCACTGAGTTCTGGGATTTGAGT
CCAGGTCCTCTGCAAGAGCAGCAAATGCTCCTAACACTTCTGCTTTGTGG
GATTCGGATGTTTGTTCACTTATTTTTGAGAATTTATAGATTTTCCTCAA
TGTATAGTAGAAAACTCTATGATTTACAATTTGGTAACGCTATTTGCTGT
CGCTGCTTATAGGATTTTAACCCCGCTTCCATTTGTTTTTTTATTTTTTT
TACCCCTTCCCCCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_e01.g1 MSMg01no358_e01.g1 CHROMAT_FILE:
MSMg01no358_e01.g1 PHD_FILE: MSMg01no358_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:28 2005
         (499 letters)



>mm_chr15_36899178_36900076
          Length = 899

 Score =  951 bits (492), Expect = 0.0
 Identities = 495/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagagcttatattctgatgaggatgacactctcaagcagggggttgggggaaagcgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagagcttatattctgatgaggatgacactctcaagcagggggttgggggaaagcgtct 260

                                                                       
Query: 61  ccctcctcactgactttgttgtaagaggaggaatggtggtaaggaaagtgactttttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcctcactgactttgttgtaagaggaggaatggtggtaaggaaagtgactttttcaa 320

                                                                       
Query: 121 gttgagccgttacaatgagctacccacaagaaagatatgtcagctttacaacttattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgagccgttacaatgagctacccacaagaaagatatgtcagctttacaacttattcaa 380

                                                                       
Query: 181 tttcacaacacaggggaaataattgtgttcttttttgcaacaagggagctaagactcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcacaacacaggggaaataattgtgttcttttttgcaacaagggagctaagactcagc 440

                                                                       
Query: 241 attgacacaatttatcaaggtcagtaaattcactatataactttaatcctgtttttattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgacacaatttatcaaggtcagtaaattcactatataactttaatcctgtttttattt 500

                                                                       
Query: 301 tatgtacaggactgtcttgtctgcatgtatgtatatataccatgtgcatgcagtgcccat 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgtacaggagtgtcttgtctgcatgtatgtatatataccatgtgcatgcagtgcccat 560

                                                                       
Query: 361 ggtggtcaggagagggcggtagatcttctggaaatggaattacagatgcgcgtgaatcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtggtcaggagagggcggtagatcttctggaaatggaattacagatgcgcgtgaatcac 620

                                                                       
Query: 421 tgagttctgggatttgagtccaggtcctctgcaagagcagcaaatgctcctaacacttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagttctgggatttgagtccaggtcctctgcaagagcagcaaatgctcctaacacttct 680

                           
Query: 481 gctttgtgggattcgg 496
           ||||||||||||||||
Sbjct: 681 gctttgtgggattcgg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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