BAC Information

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BAC

Clone NameMSMg01-359A04
Chromosome15 (Build37)
Map Location 36,625,415 - 36,625,912
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746
Downstream geneYwhaz, Zfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359A04.T7 (MSMg01no359_a04.b1)MSMg01-359A04.TJ (MSMg01no359_a04.g1)
ACCAG468529AG468530
length724733
length of high quality
(start - end)
495 (49 - 543)387 (63 - 449)
definitionCHROMAT_FILE: MSMg01no359_a04.b1 PHD_FILE: MSMg01no359_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:25 2005CHROMAT_FILE: MSMg01no359_a04.g1 PHD_FILE: MSMg01no359_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA
ACCAAAACAACCAAACACCCAACCAACCAACCAACCAAAAACAAAAACAA
AAAAACAAAAAACAAAAAACAAAAACAAAATAAAACACCACCATCACAAA
AAAAAAAAAAAAAAGGTGGGAAACACATCTTTTGGCTCTTGAAGACTCCT
GCCTTCATGACAGTGCCAGGTACAGAGAGAAGCTGTCTAACCATAGCTCT
GCCCTTGGACTCTGCACTCTGGATTGCCGGGTCCCACCTCTCCTCGAGAA
TGGACGTTACCTCTTCTGATTGATAGTCTATTCAGTCTATCCTCCTTTTT
CCATGATAAAAAGGTTTAGCCCAGTCCATAGGCTATCAGACAAAAACTAC
ATTTCCCAGTCTCCCTTGTTGTCAAGTGGCCACGTGACTAAGGCCCTCCC
AGAAGGTTGTAAACAGAAGTGCTGTTTGCCACTTGCCTGTCTTCTGTTTA
AAAACATTGGCCCACGCTCCCCAATACAGTTCCCGCTTCCCCAGAAGTGG
AGGCGAGGATGAAGAAGACCGGCCCCAGACCACCGCTCTAGTCCCCTCTC
TGTCTTCTGTTACAGAGGCAGTAAGCTATTGGCAGGTAAGGTGGACCAGA
CACCAAGGCTTGAAACTCTCTGTTTGGGGACATATCCATTATGTTAATGG
AAAGCAGGCCCATTCCCACTAAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGCCCCAATTCAGCTAGAAGCAAACAAAAGAAGAGC
GTCTTCCCAGTTCCTTAAGTTGAGGTGGATGGTTCTGGTTGTTTAAGAAT
TATAGATATGTTGCCATTTAAGGGATACTTTACAATGTTTTAGCTTTGGA
CAGAGAGGAAACTAGAGAGCTTAGACTCTGGGATTTCTGCCTTTTCTTTC
CTCTTCTCTTCCCTTCTTTCTTAGATGAAGGATAGGGGTGGAAAAGAAAG
GTGGATATGTAGTATTATAAAATTAAAGAAATAGACAAATAGGAATAGGT
TATTAAATTTACTCTTAAGCAAAATATTGTATAGCCATAATCCTACATTG
ATAGAAATCTTTATCTTGGATACTAAATTAAAGTTATAATTTCTTACGGG
GGCTCAAGGTTTTCATTGGGACAAAATTTTGTATATTTATGCCACATTTA
AATTTACTATTGTTACTCTTAGATAGGCATTATGTCTATGCAGCTTATTT
AACAATTCTATGCATTACCCTCCCATCTTTCTATAGGTTCGCTTTAAAAG
CCTGCCTAGGAGGGATTACCCTTTGCGCGTTTATACCTCATAATGTCCAC
CCTCCCGCCCCTACTAATACTCCCAATTTACCTTACTCAGACCTTTTTTT
CTCAAATCTCCGTTTTTCTTCCCCTCTTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_a04.b1 MSMg01no359_a04.b1 CHROMAT_FILE:
MSMg01no359_a04.b1 PHD_FILE: MSMg01no359_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:25 2005
         (495 letters)



>mm_chr15_36625348_36626245
          Length = 898

 Score =  909 bits (470), Expect = 0.0
 Identities = 490/498 (98%), Gaps = 3/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaccaaaacaaccaaacacccaaccaaccaaccaaccaaaaacaaaaacaaaaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaccaaaacaaccaaacacccaaccaaccaaccaaccaaaaacaaaaacaaaaaaacaa 506

                                                                       
Query: 61  aaaacaaaaaacaaaaacaaaataaaacaccaccatcac---aaaaaaaaaaaaaaaaag 117
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 505 aaaacaaaaaacaaaaacaaaataaaacaccaccatcacaaaaaaaaaaaaaaaaaaaag 446

                                                                       
Query: 118 gtgggaaacacatcttttggctcttgaagactcctgccttcatgacagtgccaggtacag 177
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgggaaacacatctgttggctcttgaagactcctgccttcatgacagtgccaggtacag 386

                                                                       
Query: 178 agagaagctgtctaaccatagctctgcccttggactctgcactctggattgccgggtccc 237
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 agagaagctgtctaaccatagctctgcccttggactttgcactctggattgccgggtccc 326

                                                                       
Query: 238 acctctcctcgagaatggacgttacctcttctgattgatagtctattcagtctatcctcc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acctctcctcgagaatggacgttacctcttctgattgatagtctattcagtctatcctcc 266

                                                                       
Query: 298 tttttccatgataaaaaggtttagcccagtccataggctatcagacaaaaactacatttc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttccatgataaaaaggtttagcccagtccataggctatcagacaaaaactacatttc 206

                                                                       
Query: 358 ccagtctcccttgttgtcaagtggccacgtgactaaggccctcccagaaggttgtaaaca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ccagtctcccttgttgtcaagtggccacgtgactaaggccctcccagaaggttgtaaaca 146

                                                                       
Query: 418 gaagtgctgtttgccacttgcctgtcttctgtttaaaaacattggcccacgctccccaat 477
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 145 gaagtgctgtttgctacttgcctgtcttctgtttaaaaacattggcccgcgcttcccaat 86

                             
Query: 478 acagttcccgcttcccca 495
           ||||||||||||||||||
Sbjct: 85  acagttcccgcttcccca 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 898
Length adjustment: 10
Effective length of query: 485
Effective length of database: 888
Effective search space:   430680
Effective search space used:   430680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)