BAC Information

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BAC

Clone NameMSMg01-359L05
Chromosome15 (Build37)
Map Location 102,789,544 - 102,789,902
singlet/doubletsinglet
Overlap genenone
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11
Downstream geneHoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359L05.T7 (MSMg01no359_l05.b1)MSMg01-359L05.TJ (MSMg01no359_l05.g1)
ACCAG469053AG469054
length777787
length of high quality
(start - end)		366 (50 - 415)---
definitionCHROMAT_FILE: MSMg01no359_l05.b1 PHD_FILE: MSMg01no359_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:14 2005CHROMAT_FILE: MSMg01no359_l05.g1 PHD_FILE: MSMg01no359_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATTCCGAGAGGATCCGCGGAATTCAACTGATTCTC
TTCTGTGTATTTGTGTATGGGGGCATTTCTTGAGATGGGATATTTATCTA
CTATATTTAGCTATATCAAGGACTGTTATCATGCTGGCCATATTTTCTAT
ATAAAAATAGACAAGAATAGAACAAACTATTTAAAAAGGAGACTATTAAC
CTCCAAAGGACTGCCAATTTTGGAGAAAGATATTTAGAACAGGCAGTTAT
CACTGTTCTAAAAGATACAAGCTCAGAAAAGAATCTCTCTTCCAGAAGAT
ATTTCTGGTGAATGAGAGGAAAGTTATCATGAAAGAAAATCAAAGGTTTG
TGTGATTTGAGTCCAAGAACCGGCCAGGGTGTGGTGACAGAGAGAGAGAG
AGAGAGAGAAAGACCGAGAGAGACATAGAGAGACAGAGAGAGACAGAGAA
TCAGAGACATATAGAGAGAGAGGGAGAGAGCGGGGAAAGGTAATCCCTCT
TTTTTTTCTTTATTCCTTCCTTTTTTTTTTTTTTTTTTCACACCTCTTTT
TCTTTCTTTATTTTTTTTTCCCCCTTATTTCTTTTTCGTCCCACCCCCTC
TTTTTTTTTTCTCTTTCTCCTTATCCATATTCTTTTCAACCCACCCTCTT
CTTCCCCCCTCCCATTTTCTCTTTCCCCTCCCCTTACACCCCTATTCTCT
TTCTCCCCCCTTTTCTTCTATCTCCTTTTTTCATCTCCACTTCCTCTTTC
CCCTTTTTTCTCACCCCTTCTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAACCTGACAGGAAAGGCAGTACACATGTAAAGTCAGGTGGAGG
ATCGCCCCAGATCACTACAGCAGATGGAGTGCCATGTGTCTCCCTCGCTC
TTTTTTTCCTCTCCTCCTCCCTCCTTCCCCCCCTTCCCTTCTTCCCCCTT
CTCCCCTTCCTCCTCTCTCCCCTTCCCCTCCTTCTTTCTCTTCCCCCCTT
TCTCCCTCCCCCCCTTTTTTTTTCTCTCTTCCTCTTTCCCTCCTTCCTCC
CTCCCCCCCCCTCTCCTTTTTCCCTTTTTTCCCCCCTTTTTCCCTCTCCT
CCCTTCTTTTCCCCCCCCTTTTCCCTTTTCCCCCCTTCCCCCCCCTTTTT
CCCCTTTCTCTCTCCCCTTCCTCCCTCTCCCTTTCTCTTTTTCCTCCCCT
CCCCCCTTTTCCCTTCTTTTCTCCCTTCCCCCCCTTTTTTCCCCCTCCCC
TCTTTTCTCCCCCTTTCCCTTTTTACCCCCCCTTTTCTCCCCCTCCCTTT
TTCCTCCCTCCCTTTTTTTTTCCCCTTTTCCTCCTCTCTTTTCTCCCCCC
CCCCCCCTCTCCTCCTTCTCCTTCCCTTTTTCTCTTTTCCTCCCCCCCCT
TTTTCTCCCCTCTCCCCTCCCTCCCCTTCACCCCTCTTCTTTTCTTTTCT
TTCTTCCCCCCTTCCCCTTCTTTTTTTTTCCCTTCTCCCTCCCCCCTTTC
CCCCTCTCCCCTCCCTTTTCCTTCCTTCCCCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_l05.b1 MSMg01no359_l05.b1 CHROMAT_FILE:
MSMg01no359_l05.b1 PHD_FILE: MSMg01no359_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:14 2005
         (366 letters)



>mm_chr15_102789343_102790108
          Length = 766

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttctgtgtatttgtgtatgggggcatttcttgagatgggatatttatctactatatttag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttctgtgtatttgtgtatgggggcatttcttgagatgggatatttatctactatatttag 261

                                                                       
Query: 62  ctatatcaaggactgttatcatgctggccatattttctatataaaaatagacaagaatag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctatatcaaggactgttatcatgctggccatattttctatataaaaatagacaagaatag 321

                                                                       
Query: 122 aacaaactatttaaaaaggagactattaacctccaaaggactgccaattttggagaaaga 181
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 322 aacaaactatttaaaaaggagactattaacctccaaaggactgcctattttggagaaaga 381

                                                                       
Query: 182 tatttagaacaggcagttatcactgttctaaaagatacaagctcagaaaagaatctctct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatttagaacaggcagttatcactgttctaaaagatacaagctcagaaaagaatctctct 441

                                                                       
Query: 242 tccagaagatatttctggtgaatgagaggaaagttatcatgaaagaaaatcaaaggtttg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tccagaagatatttctggtgaatgagaggaaagttatcatgaaagaaaatcaaaggtttg 501

                                                                      
Query: 302 tgtgatttgagtccaagaaccggccagggtgtggtgacagagagagagagagagagaga 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgtgatttgagtccaagaaccggccagggtgtggtgacagagagagagagagagagaga 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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