BAC Information

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BAC

Clone NameMSMg01-360C06
Chromosome15 (Build37)
Map Location 33,844,511 - 33,844,889
singlet/doubletsinglet
Overlap genenone
Upstream geneSdc2, Pgcp, 1700084J12Rik, Tspyl5
Downstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360C06.T7 (MSMg01no360_c06.b1)MSMg01-360C06.TJ (MSMg01no360_c06.g1)
ACCAG469388AG469389
length746761
length of high quality
(start - end)
450 (48 - 497)379 (78 - 456)
definitionCHROMAT_FILE: MSMg01no360_c06.b1 PHD_FILE: MSMg01no360_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:49 2005CHROMAT_FILE: MSMg01no360_c06.g1 PHD_FILE: MSMg01no360_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCAAACATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAGGATCCG
CGGAATTCCACACATTTCTGCGTTTAGCTCAAATTTGTTTTTCATCTCCT
CTACCTCCAATTCCTCTCCTATTCTCCTTACTAACCTCCCCTCCAAACTC
CATGTGTTTTTGTTTTATTTAAACTTACAGAGTCCACGTAGCATCGTCTG
TGTTTCTATGGGTGTAAGACCATCTTCTTCAAGAACACAGGTAGCCTCAG
AGGGCCACACCAGTGAAGAAAACTGACTGCACCCCCCTTACACACTCAAT
CACATTCACCAGCCATCAATAGTCTTTAGTTTCTCATGTAGGGGTGGGAA
TTCACGAGCCCATCATCATCCATACTGGGGTGGGACTTCATGGGCTTGTC
CTCATCTATGCTGACAGTTTTTGCTGGCTTGATCTAATGCAGAGCTCATG
CATGTCACTATGAGTTGATGTGCACAACAGCCCTGCCATGTCTGGCACAA
ACTGGCTGCTTCCCTGAGGATGTCCACCACCTTAAGATCTTTTCACTCCC
CCTCCAAAATAACCCCTGAGTCTTTCTTAAGGGGAGTGTGAATCAGAAAC
AGATGCCCCCTTTCCGACTCATGTTCTTTTTATTTCCTTTTTCTTTGTTT
TTCCAGAATGGGTTTTTTTCTTTGTAATCCCTTGCTGTTCCTGTTATATT
TCACTCTGTAAACCCATTTTTTCCTTCTAAATCTTTATTTTCCTCT
CTTCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTATCTTCAGGCAGAGCAG
CCCCAGTGAATAGAGCACTGTAATAAAACCCTTTTATATGGCTGTCATAG
AAAGACAAACCTTTTCCAAAGCAAATGGATTTGAGTATTTTCGAGATATG
ATAAACAGCCTGACAAAAAGGAGCTGAATTTCTCTTTTAAATGTTCAGTG
GGTGGAGGTTTTAACTTGCCTTGTCAGGTAAAAAAAGAATTCATTATGAA
AGCCATTCTAGCTGAAACTCCGGAATGAAAACTAGACGGAATCAGAGTGG
AAAGGAATGATTTAGAAATGTGGTAAAGGGAGTAGTTTAATGAATAAAGT
GTCAACTTTCCATAGGAGCAAAAATAAATCACACAAGGGCTTAACCAGCT
TTGTTGTCTTGCATTAGCTTGGTATAGCCAGCACCCTGCACATACTGCGA
GGAAACATTATAGTCTAATTCTCACTAATATCTGCATAAGTGAGCTGCTC
GATATGACGCCAATAATGGCCTTTCCTCTATTTCATGAACTTCCCTCCTT
CCCCAATCGGTTGAAAAGAAAGTCTATGAAGGATAAATTTTTCGAAAAAT
GGCTGTCCATTTTTCACGTTTTCTTCCTTGTTTACTCGGTTTTCGCATAC
CCATATTCCCATTTCCCCCCCCCCTTATTTTTTTCCCTCGCTTGCCCTAA
CATTTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_c06.g1 MSMg01no360_c06.g1 CHROMAT_FILE:
MSMg01no360_c06.g1 PHD_FILE: MSMg01no360_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:49 2005
         (379 letters)



>mm_chr15_33844311_33845089
          Length = 779

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttatcttcaggcagagcagccccagtgaatagagcactgtaataaaacccttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctttttatcttcaggcagagcagccccagtgaatagagcactgtaataaaacccttttat 520

                                                                       
Query: 61  atggctgtcatagaaagacaaaccttttccaaagcaaatggatttgagtattttcgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atggctgtcatagaaagacaaaccttttccaaagcaaatggatttgagtattttcgagat 460

                                                                       
Query: 121 atgataaacagcctgacaaaaaggagctgaatttctcttttaaatgttcagtgggtggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atgataaacagcctgacaaaaaggagctgaatttctcttttaaatgttcagtgggtggag 400

                                                                       
Query: 181 gttttaacttgccttgtcaggtaaaaaaagaattcattatgaaagccattctagctgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gttttaacttgccttgtcaggtaaaaaaagaattcattatgaaagccattctagctgaaa 340

                                                                       
Query: 241 ctccggaatgaaaactagacggaatcagagtggaaaggaatgatttagaaatgtggtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctccggaatgaaaactagacggaatcagagtggaaaggaatgatttagaaatgtggtaaa 280

                                                                       
Query: 301 gggagtagtttaatgaataaagtgtcaactttccataggagcaaaaataaatcacacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gggagtagtttaatgaataaagtgtcaactttccataggagcaaaaataaatcacacaag 220

                              
Query: 361 ggcttaaccagctttgttg 379
           |||||||||||||||||||
Sbjct: 219 ggcttaaccagctttgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)