BAC Information

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BAC

Clone NameMSMg01-360D04
Chromosome15 (Build37)
Map Location 20,052,749 - 20,053,076
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360D04.T7 (MSMg01no360_d04.b1)MSMg01-360D04.TJ (MSMg01no360_d04.g1)
ACCAG469431AG469432
length748760
length of high quality
(start - end)
402 (46 - 447)408 (75 - 482)
definitionCHROMAT_FILE: MSMg01no360_d04.b1 PHD_FILE: MSMg01no360_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:53 2005CHROMAT_FILE: MSMg01no360_d04.g1 PHD_FILE: MSMg01no360_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAAAATGATATTCTCTTAAATAAATAACTTGGGGGGGTGTTGG
TTTTTAAATTCACTTTTTCTTTTCTTTTCTTCTTTTTTTTCTTTTCTTTT
TTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTCTGAGTCAGGGTTTCTCT
GTGTAGCCCTGGCTGTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAA
AAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCTCCA
CCACTGCCCCGCAAATCCACTTTTTCTTATCAAAAATTAGCTCCTGGTTA
GGGAGCTAGTTCAGTGTATAAAGTTCTTACTGTGCAACTGCAAGGGCAAG
AGTTGACTTCCCCTCAGTTAATGTAAAATAAAAACGCAGATTGGTAGCTG
TAACCAGAGAGATCCAGGGAATTTGGGCCAGATAGCATAATAAAATTTTT
ATTTTATCATTTTCTATCTAGTTATATGGTCTGCTTCTGTTTCAATATAT
ACTTTGTTTTGAGACAATGTGACTACTTAGCTTATGGAAGATAATGGAGG
ATTTCCCTTGGGCTTGTTTCTAAATTCACTTTTTTTTCCCCCTTTCTTTT
GTGTATGTTTCTTAGCTTTCTTTTCTTGCCTTTTTCCTCTTATTCTTTTT
TTTGGACTTTTTACTTGCCTCTTGGTGGCACTTTCTTTTCTTCATCTC
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTTTCCAGTTTGTATCCCCTTGA
TTTCCTTTTGCTGCCTAACTGCTCTGGCAAGGAAGTCAAGTACTATATTG
AATAGGTAGGGAGAGAGTGGGCAGCCTTTTCTAGTCCCTAATTTTAGTGG
GATCGCTTCCAGCTCACCTCCACTTAGTTTGAACTTAGGACTGCATTCAT
TGTGTCCTAAAAGTTAGGGTACGTTATTGCTTCATTTTCATTAAAATTTT
AAAAAGTCTTTAATTTATTTCTTTATTTATTTCTTCCTGATTGGAGCCTG
CCCTTCCTATAATCCTGGTTGATTCAGGACTCCACAGAGTCCAGCATTCT
CTGTGATCTTTTGATTCCTGGATTCTGTGAACCTGAGATTCTGGGTGTGT
CAGAGTTTGTGGCAGTCAAGCTTCCTCTGTTGCCCTGAGATCCTGGTGTG
TCCCAGCTCCTGGGACCCTGGGATCCTGGAATCCCTGAGCCTGGATTTGG
CGTTTCCTCAGCGGACCATTGTGCCTGTCCGTTGTGTCCCATTTCATTTT
TTTCCCTTTTATGCTCTTTTTTGTTTTTTCTTTTTCTTTTCTGCGTCAGG
CCTCTCTTTTCTTTTCGTTCCTCGGTTTTTTCTGTTACTCCCTTCCATTC
TGCTTTTATTACTTTTCCTTTTCTCCTCTTTTTTTCGTTCTTTTTTCCTT
TCCTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_d04.b1 MSMg01no360_d04.b1 CHROMAT_FILE:
MSMg01no360_d04.b1 PHD_FILE: MSMg01no360_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:53 2005
         (402 letters)



>mm_chr15_20052282_20053083
          Length = 802

 Score =  574 bits (297), Expect = e-168
 Identities = 325/335 (97%), Gaps = 7/335 (2%)
 Strand = Plus / Minus

                                                                       
Query: 68  ctttttcttttcttttcttcttttttttcttttcttttttttttctttttcttttttttt 127
           |||||| |||||||||||  ||| ||||||||| |||||||||| ||||| |||||||||
Sbjct: 795 cttttt-ttttcttttct--tttcttttctttt-tttttttttt-ttttt-ttttttttt 742

                                                                       
Query: 128 ttttttttttctgagtcagggtttctctgtgtagccctggctgtctggaactcactttgt 187
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttttttttt-tgagtcagggtttctctgtgtagccctggctgtctggaactcactttgt 683

                                                                       
Query: 188 agaccaggctggcctcaaaaatccacctgcctctgcctcccaagtgctgggattaaaggc 247
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agaccaggctggcctcagaaatccacctgcctctgcctcccaagtgctgggattaaaggc 623

                                                                       
Query: 248 atgctccaccactgccccgcaaatccactttttcttatcaaaaattagctcctggttagg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atgctccaccactgccccgcaaatccactttttcttatcaaaaattagctcctggttagg 563

                                                                       
Query: 308 gagctagttcagtgtataaagttcttactgtgcaactgcaagggcaagagttgacttccc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gagctagttcagtgtataaagttcttactgtgcaactgcaagggcaagagttgacttccc 503

                                              
Query: 368 ctcagttaatgtaaaataaaaacgcagattggtag 402
           ||||||||||||||||||||||| |||||||||||
Sbjct: 502 ctcagttaatgtaaaataaaaacacagattggtag 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)