BAC Information

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BAC

Clone NameMSMg01-360G01
Chromosome15 (Build37)
Map Location 10,991,792 - 11,149,673
singlet/doubletdoublet
Overlap geneAdamts12
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3
Downstream geneTars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G01.T7 (MSMg01no360_g01.b1)MSMg01-360G01.TJ (MSMg01no360_g01.g1)
ACCAG469567AG469568
length736743
length of high quality
(start - end)		493 (40 - 532)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no360_g01.b1 PHD_FILE: MSMg01no360_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:06 2005CHROMAT_FILE: MSMg01no360_g01.g1 PHD_FILE: MSMg01no360_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,149,204 - 11,149,673)(10,991,792 - 10,992,079)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCCATGATGTCCACAATGTGTCCCCAAAGTAATGAAGTAAAATGGGT
CCAGGAGGGAAGAAAGAGGAAAGAAATCAAGGCTTCAAAGACAGTTTAAA
AATAGCCTTCTAACTGATGCTGAAGACCAGTGCTGTTAAGAAAATAATAG
GGCTTGTCTGACATTTGGTGCCTGGTCTCTTGCTGAAGTAGATGTGACTA
GGGTCCTTCTGACATGATTAAGCTGTACAATTTGAAAGGCATTTCATCTG
CTTGCTTGTTTCCTTCATTCATTAAATTTCACTTTGTACCTTTATTCATG
TTCCAGGCATCATGTTAGATACTAGAGGTGTTACAGAAACAAGAAAAATA
GTTTCTGTACTCATGTTATCTACATGTTATGATAGTGGAGATACATAAAG
GAATGAATAAATTTGAAGAATCATAGTGAGTTACAATAGTGCTACCATTC
TGTGAAGGAGAAACAGAGAAAGGAGCTAGTTTTGAGTAGGATGGACATTG
AGAATTCTCTGAAGAGTCTGTACTCAGGCAAAGGCTTAAGTGTTTAAAGG
GTGTTGGCATGAGCCAAATCTATGTGTGAATGTTTGGCATCTATTTGTTC
AAAGACTACCATGTATGGAAAATGCCCACTGCATTCTTAAATTCTTTCAG
ACTCCAGAGTGCAAGGTTTTGGCACCACGCAACTGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGGCTCAGCCTTGACATAAGAGT
GCTTTGACTTCTTGTTTCAGAAACAAATCTCTATTCCAGCTATCCAGGAC
ATGGGAGCCAGTAGAGATTTTTGGTCTTCAGAAAACATCTGTTTGCTCTT
AAAAGAAAAAGAAAATGCCTGAAGCTCGTGTCTCTAGCTGCATATGAATC
AGAAGATGGCCTAGTCAGCCATCAGTGGACAGAGAGGCCCATTGGTCGTG
CAAACTTTATATGCCTCAGTACAGGGGAACGACAGGGCCAAGAAGTGGGA
GTGGGTGGGTGGGGGAGTGTNTCNNNTTNTTTTTNNTTTTTTTTTTCTTC
TCTTTTTTNTTTTTTTTTTTTTTCTCCCTTTTTCTCCTTCCCCCTTTTTC
CCTCCCCCCCCTTTTTTTCCCCTTTTGGCCTTTTTTCCCGTTCTTTTTTT
TCCTTCTTTTTTCCCGTTCCCTGTCTTCGCTTCGTCTGTTTTCCTGGTCG
CCCTCTTTCGTGTTTCTTTTCGTCCGCCTCCCGTTTCGTCTCCCTTGTTT
TTTCCTTCCTCGTCGTTTTTCTCCGTTTCCCCCCTCTTTTTCGGTCCCCC
CTCTCGTCCCTTTTTTTCCCGCTTTTTCCGCCTTTCCCCTCCTTTCGTCT
GCTCCCCGCTTTTTCCGCCTCCTGTTCCCCCTTTTTCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g01.b1 MSMg01no360_g01.b1 CHROMAT_FILE:
MSMg01no360_g01.b1 PHD_FILE: MSMg01no360_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:06 2005
         (493 letters)



>mm_chr15_11149204_11150096
          Length = 893

 Score =  862 bits (446), Expect = 0.0
 Identities = 464/470 (98%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattccatgatgtccacaatgtgtccccaaagtaatgaagtaaaatgggtccaggagg 69
           |||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 470 ggaattccatgatgaccaaaatgtgcccccaaagtaatgaagtaaaatggggccaggagg 411

                                                                       
Query: 70  gaagaaagaggaaagaaatcaaggcttcaaagacagtttaaaaatagccttctaactgat 129
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 410 gaagaaagaggaaagaaatcaaggcttcaaagacagttttaaaatagccttctaactgat 351

                                                                       
Query: 130 gctgaagaccagtgctgttaagaaaataatagggcttgtctgacatttggtgcctggtct 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gctgaagaccagtgctgttaagaaaataatagggcttgtctgacatttggtgcctggtct 291

                                                                       
Query: 190 cttgctgaagtagatgtgactagggtccttctgacatgattaagctgtacaatttgaaag 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cttgctgaagtagatgtgactagggtccttctgacatgattaagctgtacaatttgaaag 231

                                                                       
Query: 250 gcatttcatctgcttgcttgtttccttcattcattaaatttcactttgtacctttattca 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gcatttcatctgcttgcttgtttccttcattcattaaatttcactttgtacctttattca 171

                                                                       
Query: 310 tgttccaggcatcatgttagatactagaggtgttacagaaacaagaaaaatagtttctgt 369
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tgttccaggcaccatgttagatactagaggtgttacagaaacaagaaaaatagtttctgt 111

                                                                       
Query: 370 actcatgttatctacatgttatgatagtggagatacataaaggaatgaataaatttgaag 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 actcatgttatctacatgttatgatagtggagatacataaaggaatgaataaatttgaag 51

                                                             
Query: 430 aatcatagtgagttacaatagtgctaccattctgtgaaggagaaacagag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  aatcatagtgagttacaatagtgctaccattctgtgaaggagaaacagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_g01.g1 MSMg01no360_g01.g1 CHROMAT_FILE:
MSMg01no360_g01.g1 PHD_FILE: MSMg01no360_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:06 2005
         (293 letters)



>mm_chr15_10991589_10992281
          Length = 693

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggctcagccttgacataagagtgctttgacttcttgtttcagaaacaaatctctattcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggctcagccttgacataagagtgctttgacttcttgtttcagaaacaaatctctattcca 263

                                                                       
Query: 64  gctatccaggacatgggagccagtagagatttttggtcttcagaaaacatctgtttgctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctatccaggacatgggagccagtagagatttttggtcttcagaaaacatctgtttgctc 323

                                                                       
Query: 124 ttaaaagaaaaagaaaatgcctgaagctcgtgtctctagctgcatatgaatcagaagatg 183
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaaaagaaaaagaaaatgcccggagctcgtgtctctagctgcatatgaatcagaagatg 383

                                                                       
Query: 184 gcctagtcagccatcagtggacagagaggcccattggtcgtgcaaactttatatgcctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcctagtcagccatcagtggacagagaggcccattggtcgtgcaaactttatatgcctca 443

                                                           
Query: 244 gtacaggggaacgacagggccaagaagtgggagtgggtgggtggggga 291
           |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 gtacagaggaacgacagggccaagacgtgggagtgggtgggtggggga 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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