Query= MSMg01no360_h16.b1 MSMg01no360_h16.b1 CHROMAT_FILE:
MSMg01no360_h16.b1 PHD_FILE: MSMg01no360_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:14 2005
(537 letters)
>mm_chr15_50062937_50063873
Length = 937
Score = 806 bits (417), Expect = 0.0
Identities = 493/535 (92%), Gaps = 30/535 (5%)
Strand = Plus / Plus
Query: 4 ggaattctttccttaccgaagaccagattctcaacaatgatatgactcagttgatcaagt 63
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ggaagtctttccttacagaagaccagattctcaacaatgatatgactcagttgatcaagt 291
Query: 64 tttatgctgtccagcccaatgacctgagttttatctcaagaaagcatatgctagaaaata 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 292 tttatgctgtccagcccaatgacctgagttttatctcaagaaaccatatgctagaaaata 351
Query: 124 gaaacaacttatattagttgttttctgaccttaacattttcgttaagacatgtaaacaca 183
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct: 352 gaaacaacttatattagttattttctgaccctaacattttcgttaagacatgtaagcaca 411
Query: 184 catccaagagagagtcagagagacagagaggatggagacagagagataagacaggagaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 412 catccaagagagagtcagagagacagagaggatggagacagagagataagacagg-g--- 467
Query: 244 gagagagagcgagagagagagagagagagagagagagagggagagagagcgagagagaga 303
||||||||||||||||||||||||||||| |||||||||
Sbjct: 468 ----------gagagagagagagagagagagagagagag------------agagagaga 505
Query: 304 gagagagagagag-gtaataaatgagctcaaaaccaaggagaaaccttgactttacaata 362
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gagagagag---gtgtaataaatgagctcaaaaccaaggagaaaccttgactttacaata 562
Query: 363 gtcttagtgcaccagaagtagtacagttgtttattattgacaagaactcagtcatacact 422
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtcttagtacaccggaagtagtacagttgtttattattgacaagaactcagtcatacact 622
Query: 423 catataaaattcaaggaatggtgagaaagcacaggtgtgttcttagaaaagaaatgaagt 482
||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 623 catataaaattaaaggaatgatgagaaaacacaggtgtgttcttagaaaagaaatgaagt 682
Query: 483 acagttggagcaccactatctattatataaaccactatcttgtgcacatgaaagt 537
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 683 acagttggagcaccactatctattatataaaccactatcttgtgcacatggaagt 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_h16.g1 MSMg01no360_h16.g1 CHROMAT_FILE:
MSMg01no360_h16.g1 PHD_FILE: MSMg01no360_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:14 2005
(145 letters)
>mm_chr15_50228799_50229343
Length = 545
Score = 252 bits (130), Expect = 1e-71
Identities = 139/142 (97%)
Strand = Plus / Minus
Query: 1 ctgattaagtatttgaagtagggggtgggagtagcactggggagttgacgcccatagtgg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 342 ctgattaagtatttgaagtagggggtgggagtagcattggggagttgacgcccatagtgg 283
Query: 61 gccttccacttctaatgggaaatggggagaatgacttatgtgagggggtactgggaggag 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gccttccacttctaatgggatatggggagaatgacttatgtgagggggtactgggaggag 223
Query: 121 agggagggttgatatttggttg 142
||| ||||||||||||||||||
Sbjct: 222 aggaagggttgatatttggttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space: 73569
Effective search space used: 73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
