Query= MSMg01no360_m17.b1 MSMg01no360_m17.b1 CHROMAT_FILE:
MSMg01no360_m17.b1 PHD_FILE: MSMg01no360_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:38 2005
(291 letters)
>mm_chr15_8463133_8463823
Length = 691
Score = 480 bits (248), Expect = e-140
Identities = 278/293 (94%), Gaps = 11/293 (3%)
Strand = Plus / Minus
Query: 1 actgagaagtagattaactatctgtaaccatggctaccttttctacaagccacagcctgg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 actgagaagtagattaactatctgtaaccatggctacctttcctacaagccacagcctgg 265
Query: 61 tccttgagcatctctccgtctctctgtctctctttcctcaggattcttctgctcagtagc 120
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 264 tccttgagcatctctccgtctctctgtctctctctcatcaggattcttctgctcagtagc 205
Query: 121 attgcttcctaccctggtctctcagttccattgaccatctcagctgaaatgatcctttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 attgcttcctaccctggtctctcagttccattgaccatctcagctgaaatgatcctttgt 145
Query: 181 gagcctcagcgcacactctgaaggcaggggctgggggttttggag-gttgctgtgagtgg 239
||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 144 gagcctcagcgcacactctgaaggcaggggctggggg---tgg-gtgttgctgtgagtgg 89
Query: 240 nt------catgactgtgatggatccctttgagttctctggcatgatcaatta 286
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gtcagcgacatgactgtgatggatccctttgagttctctggcatgatcaatta 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no360_m17.g1 MSMg01no360_m17.g1 CHROMAT_FILE:
MSMg01no360_m17.g1 PHD_FILE: MSMg01no360_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:38 2005
(551 letters)
>mm_chr15_8279396_8280346
Length = 951
Score = 1006 bits (520), Expect = 0.0
Identities = 546/558 (97%), Gaps = 7/558 (1%)
Strand = Plus / Plus
Query: 1 tcacgtttaccagctttagctgtgcaaactttt-ccttaatttaaaactgttggtttaat 59
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 200 tcacgtttaccagctttagctgtgcaaacttttcccttaatttaaaactgttggtttaat 259
Query: 60 aaaaatggctacatctaattactggagggattagaggtaggtggattttgaattacctgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaaatggctacatctaattactggagggattagaggtaggtggattttgaattacctgg 319
Query: 120 ttgggggttacagaaaaacaaaacaaaacaaaaaaacccaaaagaaataaaatgccctat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgggggttacagaaaaacaaaacaaaacaaaaaaacccaaaagaaataaaatgccctat 379
Query: 180 aggatccaaaaataagtattgatagaatgtgtaaaaccacaagcaaccttagctatggtt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 aggatccaaaaataagtattgatagaatgtgtaaaaccacaagcaaccttagctgtggtt 439
Query: 240 cctcctcagagaacaccagtcacttcccatgtcaattccatgggaattacgtacttgcat 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 cctcctcagagaacaccagtcacttcccatgtcaattccataggaattacgtacttgcat 499
Query: 300 gcaggtacacctagctctgatctttcctctgacatccacttctcagttgaggctgacagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcaggtacacctagctctgatctttcctctgacatccacttctcagttgaggctgacagc 559
Query: 360 tgccctaacgtgcctgtttgggtgttgttatgacttatgtgtttcatagtgtacaaaaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgccctaacgtgcctgtttgggtgttgttatgacttatgtgtttcatagtgtacaaaaga 619
Query: 420 gtcagaaccacaattcattttctgtgtcatgctctacaagaaacctaaaccccccc---- 475
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 gtcagaaccacaactcattttctgtgtcatgctctacaagaaacctaacccccccccccc 679
Query: 476 --agtcataaatccctaattaggaatttcagttttagaattgcagaaaataaagatgttt 533
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caagccataaatccctaattaggaatttcagttttagaattgcagaaaataaagatgttt 739
Query: 534 atagtcattaaagtacag 551
||||||||||||||||||
Sbjct: 740 atagtcattaaagtacag 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
