Query= MSMg01no360_n21.b1 MSMg01no360_n21.b1 CHROMAT_FILE:
MSMg01no360_n21.b1 PHD_FILE: MSMg01no360_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:43 2005
(501 letters)
>mm_chr15_71082377_71083277
Length = 901
Score = 920 bits (476), Expect = 0.0
Identities = 494/504 (98%), Gaps = 7/504 (1%)
Strand = Plus / Minus
Query: 5 gaattccttcatttttct-------aaaaaaaaaaaaaactttctctcatgtcactctgc 57
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattccttcatttttctaaaaaaaaaaaaaaaaaaaaactttctctcatgtcactctgc 667
Query: 58 atctccttaggttgccaaatatgatttgctctaaatcttctctgcttcctagaatttctc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atctccttaggttgccaaatatgatttgctctaaatcttctctgcttcctagaatttctc 607
Query: 118 acacttcagtgtctttcagtaagcagcagcacctgggacctagtagatcctcagagaagt 177
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 606 acacttcagtgtctttcagtaagcagcagcacctgggacctattagatcctcagagaagt 547
Query: 178 attgagtaatctgtgtattagtttcctagaaagaacagctgtttcaacaattaaaaggac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 attgagtaatctgtgtattagtttcctagaaagaacagctgtttcaacaattaaaaggac 487
Query: 238 ctaacccttcattactcaattaattatttagatttaaagacttagctttctttatcaagt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctaacccttcattactcaattaattatttagatttaaagacttagctttctttatcaagt 427
Query: 298 atataaatttccattttcattaagatctaattgtcagctttctagaaaatacttccacca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atataaatttccattttcattaagatctaattgtcagctttctagaaaatacttccacca 367
Query: 358 tacatgtcctactcatgtacagctatgacctgtatttctaccctaacgtacacagttgcc 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tacatgtcctaatcatgtacagctatgacctgtatttctaccctaacgtacacagttgcc 307
Query: 418 acttgataatggcttcttttaactatcttccattgagaaactttgggtatatgtatctaa 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acttgatgatggcttcttttaactatcttccattgagaaactttgggtatatgtatctaa 247
Query: 478 tatgctgactccccatttctctgt 501
||||||||||||||||||||||||
Sbjct: 246 tatgctgactccccatttctctgt 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_n21.g1 MSMg01no360_n21.g1 CHROMAT_FILE:
MSMg01no360_n21.g1 PHD_FILE: MSMg01no360_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:43 2005
(451 letters)
>mm_chr15_70900396_70901242
Length = 847
Score = 756 bits (391), Expect = 0.0
Identities = 433/451 (96%), Gaps = 8/451 (1%)
Strand = Plus / Plus
Query: 1 agctatagtctaagctcaagagtcataaactctgcaaacttggcatcaatggaggtcaag 60
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 agctatagtctaagcccaagagtcataaaatctgcaaacttggcatcaatggaggtcaag 260
Query: 61 aaaagaacatcagacaacttctatcactatcacgagtggagtgtgacatggttttcaaaa 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaacatcagaca----ctatcactatcacgagtggagtgtgacatggttttcaaaa 316
Query: 121 taaccatgtttcaatcaaaactaatccttcttacaaataaccatgataatatctacatgc 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 317 taaccatgtttcaatcaaaactaatcctccttacaaataaccatgataatatctacatgc 376
Query: 181 atgaggaaaaggggtgtgagctaacaactccagcagggcacagatttgtaattatggtac 240
||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atggggaaagggggtatgagataacaactccagcagggcacagatttgtaattatggtat 436
Query: 241 aactgaaagacagaaaaaattatcagtataaggtattaaaataagaaagccatttcaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aactgaaagacagaaaaaattatcagtataaggtattaaaataagaaagccatttcaatc 496
Query: 301 ttaactatgtttgtgggacaaaacttactgggggaagatctgactttacacatgtctact 360
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 497 ttaactatgtttgtgggacaaaactttctgggggaagatctgactttatacatgtctact 556
Query: 361 cattccagaaaggatcacaaaacaaaccaaattgtggatacaaacaagtccaacttgatt 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 557 cattccagaaaggatcacaaaac----caaattgtggatacaaacaagtccaacttgatt 612
Query: 421 aacctataattttagtgagggcatttataag 451
|||||||||||||||||||||||||||||||
Sbjct: 613 aacctataattttagtgagggcatttataag 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 847
Length adjustment: 10
Effective length of query: 441
Effective length of database: 837
Effective search space: 369117
Effective search space used: 369117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
