Query= MSMg01no361_l24.b1 MSMg01no361_l24.b1 CHROMAT_FILE:
MSMg01no361_l24.b1 PHD_FILE: MSMg01no361_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:53 2005
(438 letters)
>mm_chr15_51046036_51046873
Length = 838
Score = 804 bits (416), Expect = 0.0
Identities = 427/434 (98%), Gaps = 6/434 (1%)
Strand = Plus / Minus
Query: 5 gaattctttaacaaattttagcgattccattatacatgcatacacacacacacacaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gaattctttaacaaattttagcgattccattatacatgcatacacacacacacacaaaca 731
Query: 65 cacagacagacacacacacacacacacacacacacacaaacacacaaacactgtgtgtgt 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 730 cacagacagacacacacacacacacacacacacacacaaacacacacacactgtgtgtgt 671
Query: 125 gcatgcaagggtaagagagacagagacagagacagagagacagagttggacagagagata 184
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gcatgcaagggtaag------agagacagagacagagagacagagttggacagagagata 617
Query: 185 gactgggagatagagaggcaatttgagagttagcagtatgatagtaatcaatgaacccgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gactgggagatagagaggcaatttgagagttagcagtatgatagtaatcaatgaacccgt 557
Query: 245 gtttaccttggccagttatcaagaaaactcagaactagctggaaaactgttgccaatgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtttaccttggccagttatcaagaaaactcagaactagctggaaaactgttgccaatgaa 497
Query: 305 actgacatagcttgtgaaaatattgctatctaatacctaacattgtgaaaagataacatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 actgacatagcttgtgaaaatattgctatctaatacctaacattgtgaaaagataacatg 437
Query: 365 catgtctgtatgtttctgacagattgtacccaggactgatactgtgtgcccaggccagtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catgtctgtatgtttctgacagattgtacccaggactgatactgtgtgcccaggccagtc 377
Query: 425 tgtcccttccactt 438
||||||||||||||
Sbjct: 376 tgtcccttccactt 363
Score = 85.8 bits (44), Expect = 5e-21
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 52 acacacacaaacacacagacagacacacacacacacacacacacacacacaaacacacaa 111
||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 256 acacacacacacacacatacacacacacacacacacacacacacacacacaaatacacac 197
Query: 112 acac 115
||||
Sbjct: 196 acac 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_l24.g1 MSMg01no361_l24.g1 CHROMAT_FILE:
MSMg01no361_l24.g1 PHD_FILE: MSMg01no361_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:53 2005
(414 letters)
>mm_chr15_50848533_50849346
Length = 814
Score = 762 bits (394), Expect = 0.0
Identities = 409/414 (98%)
Strand = Plus / Plus
Query: 1 ctttgctctaaagaaggaaggaattttttctgttttaagtttcaaattctcctagtaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgctctaaagaaggaaggaattttttctgttttaagtttcaaattctcctagtaaga 260
Query: 61 cataatataattaaacagcttgtgcactgtttcctaaaacatatgggaaaccatcccttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataatataattaaacagcttgtgcactgtttcctaaaacatatgggaaaccatcccttg 320
Query: 121 ttttatttgggagagggtgctgctgtgggaagaatctgtcaagcctttgtctatgactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatttgggagagggtgctgctgtgggaagaatctgtcaagcctttgtctatgactca 380
Query: 181 gaaattcataggcaaatgccaggtgactgaagagaaggctagtcgtagaatcccatgcaa 240
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 381 gaaattcataggcaaatgccaggtgactgaagagaaggctagtcatagagtcccatgcaa 440
Query: 241 ggagtgcaaatcagaagacatttaacacactaaatattatcccctgcagatgaatttaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ggagtgcaaatcagaagacatttaacacactaaatattatcccctgcagatgaatttcaa 500
Query: 301 agccacagaggatattttagaatagagaaagaaaatgtcctattaacctgatgttctggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 agccacagaggatattttagaatagagaaagaaaatgtcctattaacctgatgctctggg 560
Query: 361 atagtggtgaatagaactctccactgtgtgtgaaaatcttcagtgagcccggga 414
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 atagtggtgaatagaactctccaccgtgtgtgaaaatcttcagtgagcccggga 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
