BAC Information

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BAC

Clone NameMSMg01-362H02
Chromosome15 (Build37)
Map Location 102,279,205 - 102,279,551
singlet/doubletsinglet
Overlap geneAmhr2
Upstream geneKrt85, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1
Downstream genePrr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362H02.T7 (MSMg01no362_h02.b1)MSMg01-362H02.TJ (MSMg01no362_h02.g1)
ACCAG471127AG471128
length843799
length of high quality
(start - end)		204 (71 - 274)408 (77 - 484)
definitionCHROMAT_FILE: MSMg01no362_h02.b1 PHD_FILE: MSMg01no362_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:48 2005CHROMAT_FILE: MSMg01no362_h02.g1 PHD_FILE: MSMg01no362_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTAGGCCTATCAGGGATACACAGTGGGACCCTGTCTCAAAAGCAAAA
TAAGAAAGCAGCTTTTCAAGGACTGTATGTAAATTACTGCCAGGGCCAGC
AAGGTAATCTTTTTTTCTTTTTAGATTTTTTTTTTTTATGTGAGTAGCTG
ACCTTCAGACACACGAGAAAATAGCACCATATCCCATTACAGATGGTTGA
GACCCATCATGTGGTTGCTGGTTATTGAACTCAGGACCTCTGCAAGACAT
CCAGTGCTCTTAACCACTGAGTCATCTCTCTTGCCTCTGGTTCTTTCTTG
CTCATATGTATTACCTGCATATACGCCTTTTGTCTCCCATTATTTACCAC
ACTTTTCACTCTCTCCCTTTTTTGCTCTCTACCCCATTACTCCCTCCCCT
ACTTCCATGTTATTTCCTGCCTCATTCATCCTTCTTTTTGCTTCTTCTTC
CTCCCTCTTTTTCCCCCCCATTTTTCTCTCACTCTCTTTTTCTTTCTTTT
TCTCCTCCACCCCTCTTTTTTCCCTCCCACTTTCTCCTACCCTTTTTTAT
TTTCTTCCTTTCCTCCCCCCCATTCCCTTTTTTTTCTTTATCGTCGCTCC
CCAGCTTTTTTTCTCTCTTCCTTATTCTTTCCACTTTTCCCTTCTTTCTC
TATTTTTATATTATAATTTCTCTCTTTTTCTCCTCCTCCCACTTTTCCTT
CTCCTCTCCCATCCCCATTCCTTCATTTTTCTCCTCCCCATTATCTCACC
TCCCCTCTCTACTTTTTCTTTCTTTTCTTTCTTCATCTCCCTA

GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTCAGTCCTCTCACTTCAGCCT
CCCAAGTACGAGGATTATAGTCAAGTCCTACTACCCAGCTTTCCTCCTTT
TCACGTTGTTACCTTTTCACATTGTTAATCTCTCACCTCAGGTTACATAC
ATCTTTTCTTTTTATTAAAACTAGGAGAAATGGCTCAGGAGTTATACTGT
CTGCTCTTCCAGGGGACTAAAGTTTAATTCCCAGTACTCACATCACAGCT
ACGTTGAGAGCCCCAGGAGTGTTAATATCCTCTCCTGACTTCCATGGGCA
CCTGGCATGCCACAGTGCACAGACATACGTGCAGGTGAAACACCTATACA
CACTTTTAAAATTATTACTGGAGGGGAAGTCTTTGGGAGGCCATACCAGA
ATGGATTGTGGTGGTCAGAAAACAACTGTAATGGCTGGTTTTGTGTGTCA
ACTTGTTACAAGCTGGAGTTATCACCAAGAACGGAGACTCCCCTTGAGGA
TATGCCTCCTTGAGATCCACCTATAATGTATTTTCTTCCTTACCCGATTT
ATTCCTGCTAAGCCCCATATGCCGCTGATTTACCCTCCGTCTATATCTTC
TCTTCTTTTCTTAATGCTCCCCCTTTTCTTTTCTTCCCTCTTCTCTCCTT
TACTTCTTTCCATCTTTCCTCGCTTTTTCACTTCTCCCTTTCCCCCAACC
ATTTTCTCCTCTATCTCATTATTTCCCTCCTATTTTCCCCCACTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_h02.g1 MSMg01no362_h02.g1 CHROMAT_FILE:
MSMg01no362_h02.g1 PHD_FILE: MSMg01no362_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:49 2005
         (408 letters)



>mm_chr15_102279205_102280012
          Length = 808

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctcagtcctctcacttcagcctcccaagtacgaggattatagtcaagtcctactaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acctcagtcctctcacttcagcctcccaagtacgaggattatagtcaagtcctactaccc 288

                                                                       
Query: 61  agctttcctccttttcacgttgttaccttttcacattgttaatctctcacctcaggttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agctttcctccttttcacgttgttaccttttcacattgttaatctctcacctcaggttac 228

                                                                       
Query: 121 atacatcttttctttttattaaaactaggagaaatggctcaggagttatactgtctgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atacatcttttctttttattaaaactaggagaaatggctcaggagttatactgtctgctc 168

                                                                       
Query: 181 ttccaggggactaaagtttaattcccagtactcacatcacagctacgttgagagccccag 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ttctaggggactaaagtttaattcccagtactcacatcacagctacgttgagagccccag 108

                                                                       
Query: 241 gagtgttaatatcctctcctgacttccatgggcacctggcatgccacagtgcacagacat 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 107 gagtgttaatatcctctcctgacttccatgggcacctagcatgccacagtgcacagacat 48

                                                          
Query: 301 acgtgcaggtgaaacacctatacacacttttaaaattattactggag 347
           |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 47  acgtacaggtgaaacacctatacacatttttaaaattattactggag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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