BAC Information

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BAC

Clone NameMSMg01-362P08
Chromosome15 (Build37)
Map Location 28,257,396 - 28,257,855
singlet/doubletsinglet
Overlap geneDnahc5
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126
Downstream geneEG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P08.T7 (MSMg01no362_p08.b1)MSMg01-362P08.TJ (MSMg01no362_p08.g1)
ACCAG471518AG471519
length912768
length of high quality
(start - end)
---460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no362_p08.b1 PHD_FILE: MSMg01no362_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:31 2005CHROMAT_FILE: MSMg01no362_p08.g1 PHD_FILE: MSMg01no362_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTTGCGCCGCTATACGACTCCTATATTCAGAGGTCCGCGGAATTCTT
TAATCTGAAGTCTTGGGGATAAAGACCAGTGGCAGCTTGATTTTCTGTTG
CAAGCTGATGGATTGAGTGGCGAATTGGTTGGAGAGAAGTTTTTTCCCTC
CCTCTCTTTCCCCCCTCCCTTTCCCCTTTTCTTTTCATTCCCCCTCCCCC
CCCCTTCCTCCTCCCCCCCCTCCCCCCCCCCTCACCCCCCTTCCTTTTTC
CCCTCCCCTTTTTTTCCCTCCCCCCCTCTCTTTTTCTTTCTCCTCTTCTT
CTCTTTTTTTCTTCTTCTTCCTCCCTCTTTTTTTCTCTCCCTCCCCCTTC
TTCCTCTCCCCTTCCCCCCTTCCCCCCCCCCCCCCTTTTCCCCTCCTCTT
TTCCCTCCTTTTCTCCCCCCCTTCTTTTCCCCTCTCTCTTTTCCCCCTCT
CTCTTTTTTTTTATTCCTCTCCTCCCCCCCTTTTCTTCCCCCCCTCTCTC
CCCCCCCTCTCCTCTTCTCCCCCCTCCCTCCCCCCCCTTTCTTCTTCTCT
CTCCTTTCCCCCCCCCCCTCTCTTCCCCCCTCCTTTTCTCTCCCTCCCCC
TTCTTCTTCCCTTCTTTTCCTCCTCCCCCCCCCCTCTTTCTTCTTCTCCC
CTTCCTCTCCCCTCCCTCTTCCCTCTCCCCTTTCCCCTCCCTCCCTCCTC
CTTCCCTTTCTCTCTCCTACGCCCTCTCCCTTTTTTTCCTCCCCCTCTTT
CTCCTTTCTCTGCTCCCCTCTTCCTCTTTTTCCTTTCCTCCCCCCCCCTC
TCCCTCCTCCCTCTCTTTCTCTCTCTCCCCCTCTCCCCCCTCCCCCTCCT
TTCTCCCCCCCCTCCCCTCTCCCCCCCCCTCCCCTTCCCCTCCTCCTCCC
CCCCCCCCCCCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGAGAAAAGTAGTGAAGTGGATAAA
GGAGGAATTGAAGGGGACAGAATATGAGGTAGATTCCTTAAAATTCATTG
CACACCTATATGACATTCCTCAACAATCTTTAAAAGAAATGAAAATATTC
CAATGAACAGAAAGAAGAAATGTAGCTAACTCTATAAAGACCTTCAGAGT
AGCACACCTGCTTCGAGAGCTGCTCCTCACACAGCTGGTAGAGCGTGAAA
AATTTTCTGGCCAGAACTACGTTATCAATGAAGCCGCAGCTGGCCAGCTT
CACCCTGATGATAATCTGCCGGTCAGGGACCATCATAGCCACAGAGCGGA
AGTTGATCTTCAAGTTCTCCGGGAGCTCCTGGCGTCCAGCATAGCCAGGG
TTCTGAATGGAAGCAAAACCCAAAGATGAGTGACACGCTCCTGGAACAGC
TAGGACATGCCAGCATGATATTAAGAGATTCATTATGCACACAACACAGA
TCTGGAATGTCAACTGGGCAGCTCATTTACATATCTCACTCTTCCTTTGT
CTGGACCGTCTAAGTCATGAGCTATTAATATGAGCTTTGTTTAACTTCCA
TAGGTTTTCCCACCGAATCGATAATTACAATTACCGCTTGCATGTTTGAT
GCCCCCGCGATCAGGTCATTGTCCACAAGTGTCCCCTTGATATTATATAC
CCGCTTTCCGCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p08.g1 MSMg01no362_p08.g1 CHROMAT_FILE:
MSMg01no362_p08.g1 PHD_FILE: MSMg01no362_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:31 2005
         (460 letters)



>mm_chr15_28257196_28258055
          Length = 860

 Score =  890 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagaaaagtagtgaagtggataaaggaggaattgaaggggacagaatatgaggtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agagagaaaagtagtgaagtggataaaggaggaattgaaggggacagaatatgaggtaga 601

                                                                       
Query: 61  ttccttaaaattcattgcacacctatatgacattcctcaacaatctttaaaagaaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttccttaaaattcattgcacacctatatgacattcctcaacaatctttaaaagaaatgaa 541

                                                                       
Query: 121 aatattccaatgaacagaaagaagaaatgtagctaactctataaagaccttcagagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aatattccaatgaacagaaagaagaaatgtagctaactctataaagaccttcagagtagc 481

                                                                       
Query: 181 acacctgcttcgagagctgctcctcacacagctggtagagcgtgaaaaattttctggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acacctgcttcgagagctgctcctcacacagctggtagagcgtgaaaaattttctggcca 421

                                                                       
Query: 241 gaactacgttatcaatgaagccgcagctggccagcttcaccctgatgataatctgccggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaactacgttatcaatgaagccgcagctggccagcttcaccctgatgataatctgccggt 361

                                                                       
Query: 301 cagggaccatcatagccacagagcggaagttgatcttcaagttctccgggagctcctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cagggaccatcatagccacagagcggaagttgatcttcaagttctccgggagctcctggc 301

                                                                       
Query: 361 gtccagcatagccagggttctgaatggaagcaaaacccaaagatgagtgacacgctcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtccagcatagccagggttctgaatggaagcaaaacccaaagatgagtgacacgctcctg 241

                                                   
Query: 421 gaacagctaggacatgccagcatgatattaagagattcat 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaacagctaggacatgccagcatgatattaagagattcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)