BAC Information

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BAC

Clone NameMSMg01-363A01
Chromosome15 (Build37)
Map Location 30,563,170 - 30,563,381
singlet/doubletsinglet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363A01.T7 (MSMg01no363_a01.b1)MSMg01-363A01.TJ (MSMg01no363_a01.g1)
ACCAG471551AG471552
length771816
length of high quality
(start - end)
121 (74 - 194)208 (78 - 285)
definitionCHROMAT_FILE: MSMg01no363_a01.b1 PHD_FILE: MSMg01no363_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:34 2005CHROMAT_FILE: MSMg01no363_a01.g1 PHD_FILE: MSMg01no363_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTAACAAAATTACGGCTGTAAAATAATGACCAAAAGAAGTCTGGG
CTTAATTTCTTTATATGCATATGTGTGTGTATGTATGTATGTATGTATAT
GTGTGTATATATGTGTGTATATATATATTCAAAACTAATCAACTAATGAA
AAATTAACGCGTGCACTTACAACGATTTACTTTACGGAACACTACCATGT
ATTTAATTTTTTGACCCACAGTTTGCACCCCAGCAATGCACCTCCTTTCC
TAATTAACCATCCTAAAACCTACCCCTTTTTCTTACTTGTGGTCATGCAC
ATCTTTACTGCCCTCTCCCACTACCCACCACCTACCCCTCTTCGCCCCAC
CCCCACCTCCCGTTTCTTTCTCTCCCACCACCGCCCACCTTCCGCCCTCT
TAATCTTTGCCAGCCTCCCCCACTTAAACCCCATTCCCCCATTCCCTCCC
CCCCATCCCCCCCTTCCCTCCCCTTTCCTCCCTCACCCCCCCTCACACCC
CCCCTCCTCCCCCCTCCCCTTTCTTACCCTCCTTCCCCCCTCTTATCTAT
TTCCCCTCCCCCTCCCCCCCTTTCCCCTTCTTCTTCCACCCCAACTCATT
CCACCGCTCAACCTTCCCCCTCCACCCCCCCCCCCACCCTCAATTATTCC
CTTCTTACTTTCCTCCCCACTCCCCTAATCCCCATCTTTCCATCTTTCCC
TTCCCCTCTCTCTCCTCACCA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTATAAAGACAAGTCAGGAC
CCTGTGATTTCTTTCCAGAAATAATACTGTTATTAAAAAAAAAAAAAGCA
AAGAAAGTATCAAGGATGTTCCAGGGCTGTCCCATAGGTCCTGTGTCTGC
ATGAATGAAGAACTGGCTTTGTATCATACTGCTAAAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAAGAAAG
AAAGAAAGAAAGAAAGAAAGATTTTTTTTTTTTAAAGACAGAAAGAAAGA
AAGAAATAAAGAAAGAAATATTGACAGAAAGATAGAAAGCATGAACACAT
TTGTATTCCCAGGTTCTTGCTCCTCCATCATTCTTCCCACACCAGCCATC
TCTCAAATACACTCAAGGGAAACTAGCATATATGTGCTCACTTCTCCATG
AGGGCTTAAGTTCCTGAATTTAATATTACGTTTGAGCTTTATCCTTTTTT
CTACAACAGCGTTGTGTAAACCTCTCGTTAGAACGTCTCCTATCTGTTAT
CCCTTACTAGAACCTTCCCATCTGTCTTTGCTCACATGCCTCCTGATCCC
CTACACGACTACTTATTTTGTACTCTTTCTTTTTTCTCCCCTTTATGTCT
TTTCTTCATTTCGCTTTTATATCCCCTCCTGGCCCTTTTATCCTTATCCC
TCTTCTCCTGTTCCGAATCCACCTTCCTGCTCCATCTTTATAATATCTCT
TCTTATTCCTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_a01.g1 MSMg01no363_a01.g1 CHROMAT_FILE:
MSMg01no363_a01.g1 PHD_FILE: MSMg01no363_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:35 2005
         (208 letters)



>mm_chr15_30562970_30563581
          Length = 612

 Score =  391 bits (202), Expect = e-113
 Identities = 208/212 (98%), Gaps = 4/212 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtataaagacaagtcaggaccctgtgatttctttccagaaataatactgttatt--- 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 201 catgtataaagacaagtcaggaccctgtgatttctttccagaaataatactgttatttaa 260

                                                                       
Query: 58  -aaaaaaaaaaaaagcaaagaaagtatcaaggatgttccagggctgtcccataggtcctg 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaaaaaaaagcaaagaaagtatcaaggatgttccagggctgtcccataggtcctg 320

                                                                       
Query: 117 tgtctgcatgaatgaagaactggctttgtatcatactgctaaagagagagagagagagag 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctgcatgaatgaagaactggctttgtatcatactgctaaagagagagagagagagag 380

                                           
Query: 177 agagagagagagagagagagagagagagagag 208
           ||||||||||||||||||||||||||||||||
Sbjct: 381 agagagagagagagagagagagagagagagag 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 612
Length adjustment: 9
Effective length of query: 199
Effective length of database: 603
Effective search space:   119997
Effective search space used:   119997
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)