BAC Information

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BAC

Clone NameMSMg01-363B19
Chromosome15 (Build37)
Map Location 75,516,575 - 75,516,936
singlet/doubletsinglet
Overlap genenone
Upstream geneJrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt
Downstream geneRhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363B19.T7 (MSMg01no363_b19.b1)MSMg01-363B19.TJ (MSMg01no363_b19.g1)
ACCAG471632AG471633
length752761
length of high quality
(start - end)
246 (36 - 281)481 (74 - 554)
definitionCHROMAT_FILE: MSMg01no363_b19.b1 PHD_FILE: MSMg01no363_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:43 2005CHROMAT_FILE: MSMg01no363_b19.g1 PHD_FILE: MSMg01no363_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCNATGT
GGGCTAGCTCTCGGTCAAACCCACAATGGAGGAAGTCTCTTTTATGCAAT
CATATTCATTAAAAGAAAGAAACAAGCCAGGAGGTGGGGGCACGCCTTTA
ATCCCAGCATTCAGGAGGCAGAGGCAGGTGGATCGCTGAGTTCAAGGCCA
GCCTGGTCTACAAAGGGAGTTCTAGAATAGACGGAGCTACAAAGAGAACC
TNTGTCGGGCCGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NT
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTCACTAAGTAGCCCAGGATGGCC
TTTCTGCTTCTGCATCCCCAGAGCTAGGACTCTACAGATGCCCTCCACTA
CGCCCCGCTCTTTGTAGCTTCCTTCCTTTCTCTTTTTGTTGTTGTTTTTA
TTATTTTTTAAAAGATTTATTGATTTACTTTACGTATACGAGTACACCAT
TGCTCTCTTCAGACACACCAGAGAAGGGCGTCCGACCCCATTACAGATGG
TTGTGAGCCACCATGTGGTCGCTGGGAATTGAACTCAGAGCCTCTGGAAG
AGCAGTCAGTGCTTTAAACCGCTGAGCCTTCTTTCCTGCCCCAACTTTCT
AACAGTGGTGATTTGGGGGCGTGGGAGCAGGAGATGACACGCAGGCCCAG
GGCCTCACACACAGTAGGCTCTTCTGTTTTACCCTTAAATTCAACTCCAA
CCCAGAAGTTTGTCATGTTGGTGAGTCTAGTTGACCTGCTTTATTTCCGG
TTGGNTCACATGTGGGGTCATATTTAAGATGTCATTGTCTCCTTGGTTCA
TCGTCCTAGAGATTTACCCCCCTGCCTTTTTAGTCCAGGCTGTTGCCGTC
AGGTCTCGGGCGGAAGAGGGGAAGAATTTGAACTTTGGTTTTTGCAGGGT
GGAGCCCAGACCTTCTGTTGTCGGAGGGTGGATTCCCGGTTTGAGTCACT
TCTGATTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_b19.g1 MSMg01no363_b19.g1 CHROMAT_FILE:
MSMg01no363_b19.g1 PHD_FILE: MSMg01no363_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:43 2005
         (481 letters)



>mm_chr15_75516056_75516936
          Length = 881

 Score =  594 bits (307), Expect = e-174
 Identities = 349/363 (96%), Gaps = 3/363 (0%)
 Strand = Plus / Minus

                                                                       
Query: 121 gtttttatta-ttttttaaaagatttattgatttactttacgtatacgagtacaccattg 179
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 881 gtttttattatttttttaaaagatttattgatttattttacgtatacgagtacaccattg 822

                                                                       
Query: 180 ctctcttcagacacaccagagaagggcgtccgaccccattacagatggttgtgagccacc 239
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ctctcttcagacacaccataggagggcgtccgaccccattacagatggttgtgagccacc 762

                                                                       
Query: 240 atgtggtcgctgggaattgaactcagagcctctggaagagcagtcagtgctttaaaccgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 761 atgtggtcgctgggaattgaactcagagcctctggaagagcagtcagtgctctaaaccgc 702

                                                                       
Query: 300 tgagccttctttcctgccccaactttctaacagtggtgatttgggggcgtgggagcagg- 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 701 tgagccttctttcctgccccaactttctaacagtggtgatttgggggcgtgggagcagga 642

                                                                       
Query: 359 agatgacacgcaggcccagggcctcacacacagtaggctcttctgttttacccttaaatt 418
           || |||| | |||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 641 ag-tgacgctcaggcccagggcttcacacacagtaggcacttctgttttacccttaaatt 583

                                                                       
Query: 419 caactccaacccagaagtttgtcatgttggtgagtctagttgacctgctttatttccggt 478
           |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct: 582 caactccaacccagaagtttgtcaggttgttgagtctagttgacctgctttgtttccggt 523

              
Query: 479 tgg 481
           |||
Sbjct: 522 tgg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)