BAC Information

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BAC

Clone NameMSMg01-363K24
Chromosome15 (Build37)
Map Location 23,936,328 - 23,936,720
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh18, LOC624863
Downstream geneLOC666989, LOC666999, LOC100040492, LOC100040499, LOC100040529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363K24.T7 (MSMg01no363_k24.b1)MSMg01-363K24.TJ (MSMg01no363_k24.g1)
ACCAG472064AG472065
length750767
length of high quality
(start - end)		375 (44 - 418)398 (80 - 477)
definitionCHROMAT_FILE: MSMg01no363_k24.b1 PHD_FILE: MSMg01no363_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:29 2005CHROMAT_FILE: MSMg01no363_k24.g1 PHD_FILE: MSMg01no363_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTACTGACTGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGTACAAGCCATTGCTGTTCTGT
TCAGGAATGTTTCCCCTGTGCCCATAACTTCAAGGATTTTCCCCACTTTG
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACACGGAGATAAGTATGGATCGATTTGCATTC
TTCTAAATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
CCATTCCTCCACTGGCGGCCTTAGCTCCCTTGCGGAAGACAACTGACCAT
ACCTGTGTGGGCTCCATTTTTGGCCCTCCAATCTCTCTATCCGGCCAATT
GGGTGTTTCCCCCCCCCCCCCGCCCCTTTTTAANATTTGCCCTGTAAACC
TTTACCCCCCCTGGTGTGCTANTCCCAGTTCCTTTTCTTTTGTCAAAATT
CTTCCCAATAACCTTTCCCCTTTTCCCCAATTTCCCCTACCCTCCCCCCC


NNCCCAATGAATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAAGGAGCTATATAAGCTG
CTTTGTAAAATACTGGGGTCACTGTTTTGTTGGAGAGATGTTTTGTAGAT
TGTGTGAAGATGTGTTTCTTCCCTGCCTGCCAGCCCAAGACACCTTCTTA
TGGGTTAAAATAAAAATATATGGCCTATAGCCAATGGCAGAATAGTAAGG
TGGGATATCTGGCAGAGAGAGAGAGTGAGAGAGAGAGACAGGGAGAGAGA
CAGAGAGAGAGACAGAGAGAGACAGAGAGAGAAACAGAGAGACAGACAGA
GAGACAGGGAGAGAGACACAGAGAGAGACAGAGACACACAGAAAGACAGA
GAGACAGAGAGACAAAGAAGGAGGAGGAGAAGGAGGAGGAGAAGGAGAAG
GAGAAGGAGAAGGAGAAGGAGAAGGATAATTTTATNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTGTTTTTTTTTTTTTGTGTTTGTTTGGTTTTGATT
GGTGATTTTTTGTTTTATGTGTTTTTTGTATTATATTTTTTGTAATGGGG
TTATATGTTGTTTTTTTGATGTTTTTTTTTTTATTATTTTGTGTTATTNT
TNTTTTTTGATTTTTATATTGTTTTTATTGTTTTTTTATTGTTATAGTTT
TTTTTTTTATTTATTAGGATTATATTATTTGTTTTTTTAGTTGTATTTTA
TTGATGTTTTATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_k24.g1 MSMg01no363_k24.g1 CHROMAT_FILE:
MSMg01no363_k24.g1 PHD_FILE: MSMg01no363_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:29 2005
         (398 letters)



>mm_chr15_23936128_23936925
          Length = 798

 Score =  717 bits (371), Expect = 0.0
 Identities = 389/397 (97%), Gaps = 4/397 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaaggagctatataagctgctttgtaaaatactggggtcactgttttgttggagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaggagctatataagctgctttgtaaaatactggggtcactgttttgttggagagat 260

                                                                       
Query: 61  gttttgtagattgtgtgaagatgtgtttcttccctgcctgccagcccaagacaccttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gttttgtagattgtgtgaagatgtgtttcttccctgcctgccagctcaagacaccttctt 320

                                                                       
Query: 121 atgggttaaaataaaaatatatggcctatagccaatggcagaatagtaaggtgggatatc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggttaaaataaaaatatatgacctatagccaatggcagaatagtaaggtgggatatc 380

                                                                       
Query: 181 tggcagagagagagagtgagagagagagacagggagagagacagagagagagacagagag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 381 tggcagagagagagagtgagagagagagacagggagagagacagagaga----cagagag 436

                                                                       
Query: 241 agacagagagagaaacagagagacagacagagagacagggagagagacacagagagagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agacagagagagaaacagagagacagacagagagacagggagagagacacagagagagac 496

                                                                       
Query: 301 agagacacacagaaagacagagagacagagagacaaagaaggaggaggagaaggaggagg 360
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 497 agagacacacagaaggacagagagacagagagacaaagaaggaggaggagaaggagaagg 556

                                                
Query: 361 agaaggagaaggagaaggagaaggagaaggagaagga 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 557 agaaggagaaggagaaggagaaggagaaggagaagga 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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