BAC Information

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BAC

Clone NameMSMg01-364D24
Chromosome15 (Build37)
Map Location 61,763,200 - 61,945,632
singlet/doubletdoublet
Overlap geneMyc, Pvt1
Upstream geneLOC100040323
Downstream geneLOC100040584, H2afy3, LOC100040430, Tsg101-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364D24.T7 (MSMg01no364_d24.b1)MSMg01-364D24.TJ (MSMg01no364_d24.g1)
ACCAG472493AG472494
length784824
length of high quality
(start - end)		438 (53 - 490)197 (86 - 282)
definitionCHROMAT_FILE: MSMg01no364_d24.b1 PHD_FILE: MSMg01no364_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:17 2005CHROMAT_FILE: MSMg01no364_d24.g1 PHD_FILE: MSMg01no364_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,945,198 - 61,945,632)(61,763,200 - 61,763,395)
sequence
NCCATTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCCTGTAGATCAGACTGGCCTTGAATTCACAGAGAAC
TATCCACCTCTGCCTCCCAAGTGCGGGGACTAAAAGTGTGCCCCACCATT
ATCAGATGGTTCTAGGTTTTCTAATACTCCATCCAAAGAATTATTTTTAC
TATTCTACATCTCTTCATGGATCCTAAACATATAACAAAGAGTTTCTGGT
GACCAAGGGTGAAAAGGAGTCTGCGAGTTTGTGGCTGGCTGTTTATTTGG
TCAAGTCATCAAGTGTTGCTAAATTGTCCAGAGCCTTGTCTCACTCCAGA
GAGCCAAGTACCAGGGAGAAGAGGCCCATACTCACCCATTTTGACCCAGG
TTTCCAGTGGTCACTGCCTAGTCCCACTCCATATCAGGCAAGATCTTTGG
TGCAGTGACTATAAGCCTTACCGTTACCCAAACTCAGTCAGGGCTTGGTC
AAAGGCTGGGAGGTTACACAGATGACTGCCTAAAATCTGTTGCCTTTGCC
AGCGCTGTGATCCCCCGGGTTAAATATTCCAGGAACAAGGGGAAATGGGC
TGGGGATACACATTTACGTCCGCTTTTTTTATCGCCCTCTTTCCACCTTG
CTTTTTCTCTTAATTTCTACTCTATTCGCTTTCTATTTCCTTCTTTCTTT
TTCTCAATTCCCATCCCTTCTTTTCTTATCTCTTTCTTCTTTACCATTCT
CCATTTCTCTTTTTCCCCTCTTATATTTTTGTCG

TCTTTTTTCTACGATGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTACTCCAAGTG
GGCTTGCAGCTCATACGGAGGGCCTGGAACATAAACCTGCAAAAAACACA
GCATGGTAGAAAGTGGCAAAAAAGAACTCTCAAGATCCAAATCCAATGAG
GGTATTTTCCTAACATGAAGTTCTTCGGTGAATTATAAGCAATGGGCCTT
ATAGTTCGTATTTTTTATGTCTGTTTTATTTCTCTTTCCTAAGCTTTGAT
TTCATTGCCTTACATGTGCCTTATCTTTGCACACCACAGATCCTTATTTT
TTGTTCTTACTCCCTATTTATACTTACATTCCCACTTCGTTCTTACCTCA
ATCCTTTTCTAAAATCCATATCTTCTTTCTTCCCACTTAATCTATATTTT
CGTTTCTTCTCTATATTTCCCCCACTTTCTTTTCTTCTCACCCTCACAAT
CCTAATTCCCTTTTTATTCTCCTCCTTTCCGCTTCTTTATTTTACGCTTT
TTCTTCATACATTATCAAAAAATATATCTCTACTTTTATTCTTCCTCCTT
ACCCTCTATCATACCCTTACAATCTCTACCTCATTATCCTGCACCTTCTC
CTACTTTCCTCGCTTATATTTTCTCACTGCTCAACCACACTACTTCCTTT
TCTTCCCTATTTATCTCCTTTGCTTTTTTTTTCTTCCTTTCCTATCTCTC
TCGCTATAGTTACCCCGTTCATCCCCTCTAATCCATTTTTCACCACTTTT
ATTAGTGTTCTACTTAATACTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_d24.b1 MSMg01no364_d24.b1 CHROMAT_FILE:
MSMg01no364_d24.b1 PHD_FILE: MSMg01no364_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:17 2005
         (438 letters)



>mm_chr15_61944880_61945717
          Length = 838

 Score =  826 bits (427), Expect = 0.0
 Identities = 433/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatcctgtagatcagactggccttgaattcacagagaactatccacctctgcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ggaattcatcctgtagatcagactggccttgaattcacagagaactatccacctctgcct 694

                                                                       
Query: 64  cccaagtgcggggactaaaagtgtgccccaccattatcagatggttctaggttttctaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cccaagtgcggggactaaaagtgtgccccaccattatcagatggttctaggttttctaat 634

                                                                       
Query: 124 actccatccaaagaattatttttactattctacatctcttcatggatcctaaacatataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 actccatccaaagaattatttttactattctacatctcttcatggatcctaaacatataa 574

                                                                       
Query: 184 caaagagtttctggtgaccaagggtgaaaaggagtctgcgagtttgtggctggctgttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 caaagagtttctggtgaccaagggtgaaaaggagtctgcgagtttgtggctggctgttta 514

                                                                       
Query: 244 tttggtcaagtcatcaagtgttgctaaattgtccagagccttgtctcactccagagagcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tttggtcaagtcatcaagtgttgctaaattgtccagagccttgtctcactccagagagcc 454

                                                                       
Query: 304 aagtaccagggagaagaggcccatactcacccattttgacccaggtttccagtggtcact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 453 aagtaccagggagaagaggcccatactcacccattttgacccaggtttccagtggccact 394

                                                                       
Query: 364 gcctagtcccactccatatcaggcaagatctttggtgcagtgactataagccttaccgtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 393 gcctagtcccactccatatcaggcaagatctttggtgcagtgactataagccttaccgtc 334

                          
Query: 424 acccaaactcagtca 438
           |||||||||||||||
Sbjct: 333 acccaaactcagtca 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_d24.g1 MSMg01no364_d24.g1 CHROMAT_FILE:
MSMg01no364_d24.g1 PHD_FILE: MSMg01no364_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:18 2005
         (197 letters)



>mm_chr15_61762999_61763595
          Length = 597

 Score =  364 bits (188), Expect = e-105
 Identities = 194/196 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   gtgtactccaagtgggcttgcagctcatacggagggcctggaacataaacctgcaaaaaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 202 gtgtactccaagtgggcttgcagctcatacggagggcctggaacataaacctgcagaaaa 261

                                                                       
Query: 62  cacagcatggtagaaagtggcaaaaaagaactctcaagatccaaatccaatgagggtatt 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacagcatggtagagagtggcaaaaaagaactctcaagatccaaatccaatgagggtatt 321

                                                                       
Query: 122 ttcctaacatgaagttcttcggtgaattataagcaatgggccttatagttcgtatttttt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcctaacatgaagttcttcggtgaattataagcaatgggccttatagttcgtatttttt 381

                           
Query: 182 atgtctgttttatttc 197
           ||||||||||||||||
Sbjct: 382 atgtctgttttatttc 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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