BAC Information

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BAC

Clone NameMSMg01-364F08
Chromosome15 (Build37)
Map Location 103,482,875 - 103,483,185
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364F08.T7 (MSMg01no364_f08.b1)MSMg01-364F08.TJ (MSMg01no364_f08.g1)
ACCAG472556AG472557
length778794
length of high quality
(start - end)		484 (46 - 529)454 (75 - 528)
definitionCHROMAT_FILE: MSMg01no364_f08.b1 PHD_FILE: MSMg01no364_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:24 2005CHROMAT_FILE: MSMg01no364_f08.g1 PHD_FILE: MSMg01no364_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTAAGGTTGCCCGGAGAAATAAGAGAGAGTCCAATCTGCTTTGA
TATGATTGCATACATGACAAAATGTGGCCACAGCTTTTGCTACAAGTGTA
TTCATCAGAGTTTGGAGGACAATAATAGATGTCCCAAGTGTAATTATGTT
GTGGACAATATTGACCATCTCTATCCTAATTTCTTGGTGAATGAACTCAT
TCTCAAACAGAAGCAAAGATTTGAGGAAAAGAGGTTCAAATTGGACCACT
CAGTGAGTAGCACCAATGGGCATAGGTGGCAAACACTTCAAAATCTACTA
TAGGCACAAAGGTAGGAAGTTTCACAACCACAGCAGTATACCCTGCCAAC
ACTCTGCTAAAAATCATGTCCTTCTGGAACTATTACAATCTATATCTCTG
TCAGGGGGAGCAATTTTTGCGTCAGCCTCTGGTACCCAAATCGGGTGTTC
TTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTC
CCATGGTATACCAAAAGTCCCCCATATCCACCAACCATAATTCCTTTATT
TTTCATTTTTTCTCGGGTTATCCTCTGATTTTTTTTGTTTCATTTCCGCC
GAGTCCTTTTNGCTTCTCATGTTCTCTTCCCCTGCACGTTATGTCTGTCG
TTTCCCTTCGCACTACCTCGTTTCTATATTCTTATTATTTCGTGTATCCT
ACTTTTTATCACCTCGTTTTACTTCTAT

NCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGCTTGTGTCCTATATGAGTGTAA
GGCTCACATCACAATTTCACATCTCTTGACCTTGACAGTGTTCATCTCCT
AGAGTTTCTGTGAGATTTAAATAAGTCTATCGAATTCTATAACATGGTTC
TTGACATGTGTTTATAATATAAAACAACATAATTAATGGTGGCCTGATAT
TAAAGGGAAAAAATCAAAATAGAAAAAAAGTTCATTAAGATCAAGGAAAA
TAGCAAATTCCCAGAAATACCCTGAATAACAATAAAAGCAGATTGCTCCA
GGAATGTAAAACATTTCTACTCTTGGTATAATCCAATAAGAGAAAAAATT
CAGTTAAATATCAGAGATAAGCAGGTACCATGCTATATGCAGTTTATACT
TACTACTGAGTTTTATTAAATTTACAATATATCTTTAAAATATTCATACT
GCAAAAATGATGGCATTGAAATTGCTAAGGTAGCAATGAAATTGCAATAC
TTTGGCTTCTCTCATGTTTACTTATTAAGTTGATTTGGAAAAAGAATAAG
AAATTTATTATGATATAAACTTGGAACAAAACAAGGGGGGGGATTGGGAT
CTGTTCTCTCCCCCAATTCTAAAAATGGTTTTCTTGTCTTCTCTCCGTCC
TTTTTTTTTCCTTAATAAGTTTCCCCCTCTCCCTTCTCCTATAACTGTGT
ATAACTAGACTTCTTGTTTTATTCTTTTTATTCTTTTACCCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_f08.g1 MSMg01no364_f08.g1 CHROMAT_FILE:
MSMg01no364_f08.g1 PHD_FILE: MSMg01no364_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:24 2005
         (454 letters)



>mm_chr15_103482529_103483385
          Length = 857

 Score =  528 bits (273), Expect = e-154
 Identities = 301/311 (96%), Gaps = 3/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 147 aaaacaacataattaatggtggcctgatattaaa-gggaaaaaatcaaaatagaaaaaaa 205
           |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 347 aaaacaacataatttatggaggcctgatattaaaggggaaaaaatcaaaatagaaaaaaa 406

                                                                       
Query: 206 gttcattaagatcaaggaaaatagcaaattcccagaaataccctgaataacaataaaagc 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gttcattaagatcaaggaaaatagcaaattcccagaaataccctgaataacaataaaagc 466

                                                                       
Query: 266 agattgctccaggaatgtaaaacatttctactcttggtataatccaataagagaaaaaa- 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 467 agattgctccaggaatgtaaaacatttctactcttggtataatccaataagagaaaaaaa 526

                                                                       
Query: 325 -ttcagttaaatatcagagataagcaggtaccatgctatatgcagtttatacttactact 383
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 attcagttaaatatcagagataagcaggtaccatgctatatgcagtttatacttactact 586

                                                                       
Query: 384 gagttttattaaatttacaatatatctttaaaatattcatactgcaaaaatgatggcatt 443
           || |||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||
Sbjct: 587 gatttttattaaatttacaatatatctttcaaacactcatactccaaaaatgatggcatt 646

                      
Query: 444 gaaattgctaa 454
           |||||||||||
Sbjct: 647 gaaattgctaa 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 857
Length adjustment: 10
Effective length of query: 444
Effective length of database: 847
Effective search space:   376068
Effective search space used:   376068
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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