BAC Information

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BAC

Clone NameMSMg01-366A16
Chromosome15 (Build37)
Map Location 78,688,345 - 78,688,733
singlet/doubletsinglet
Overlap genenone
Upstream geneTxn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2
Downstream geneGga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366A16.T7 (MSMg01no366_a16.b1)MSMg01-366A16.TJ (MSMg01no366_a16.g1)
ACCAG473853AG473854
length794782
length of high quality
(start - end)		446 (54 - 499)389 (82 - 470)
definitionCHROMAT_FILE: MSMg01no366_a16.b1 PHD_FILE: MSMg01no366_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:45 2005CHROMAT_FILE: MSMg01no366_a16.g1 PHD_FILE: MSMg01no366_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGGCCAACTTGGTGTGCACATCAAGTCCTGGACAGC
CAAGGCTACATCGAGAGACTGTTTCAAGTGTCTCCCTGCCATCAAGGCCC
TAAAGACCTCTTTTTGAAATGAATTTCTTTCCCTAGCCCTGAAAAAGATC
TTCCACCTAAGTAGGAGTTGGAAGCAGGCAGCTGGGAGAGCCGGGCAAGG
TGACAGTAACAGAGAGGCTTCTCCACTGGAGCCTCCAGAAGGGATGTGAC
CTAGCTGGCTCAGTAATCCCAGCCCACTTCAGACTTTTAACATCCTGATA
CATAGAGTGATACATTTGTACGTGTGAGACCAAGACAGGGAGTAGCCAGG
GCAGCAGTGGAGCATGCTCAGGAGGCAGAGGCAGGAAGATTTCTGAGTTT
GAGGCCAGCCTGGTCTACAGATCAAGTTCCAGGACAGCCAGGGCTAATAG
AGAAACCCTGTCTCTAACAAAACCTAATACAATAAACAAAAAACCCCAGA
AGAGAGAGATAGAGAGAGAGATTGTTATTTTTTTTACATCCTTCCCACTC
AATGAATCATTTTTGAACGAATCACTCACCACTTTATCACTCCATTAATA
CACCAATATTTTTGTTTCCCTTTAATTACACCCTTCTTTCTTACATTTTC
CCAATTTTCATTTGTTTAAACTTCCCACAGTCCTCCTTTACCTCTTTTTT
TCCTTTCCCCTCTTCTCCCGTTTAACCCCAAACTTCTATTTTTG

TTTTTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTCTTCAGCTGAGCAC
AGTGGTGCAGATCTGTTAGTCTAGGCTTGAGAGGATCAAGAGTTCAAAGT
CATCTTTGGCTACATGGTAGATGGAGGCCAGCCTGGGCTGCTGGAGACTT
AATGTCAGAAAAATAAATGCCACTGGGTCACATGGTGAGGCTTGGCCTTG
AAGAGACAATTAGGCCACCTAATCACCTAGTAGATCAATGCCAGAATGGG
CTCCTAATAAAAGCATGGGCTGGGCCCAACTTCCCCCCTGCCTGCCATAT
GTCCTCTTGTTCTCAGCTATGACACAGCACAAGGACCCTAGCCTGGTGCG
GTGGCACGGTGGCATCCTCATGGACTTCCTAGCCTCTGGGTCACAGAGAG
NAAACATCTCTTGTTAATACTGTTTGGGATGAGATATGCTGATATAGCAG
CAAAAAAGTGGATTAAGACGGGAATATTACCAAAGGCCCATTCTCCATGT
CCTTATTCTGGTATAACAGCACCGCCCCGTTTTAAGAAAAGGCTTGGGTG
CCAAAAAACTTATGCCTTCACTCGCACCGGCGTAAGTCCCACGGGCATTC
CTTGCCCTGGGGTTGAACCCCCCCTTTGTGCAGTCCACTGCGCCCTGCTT
TAAAAACTCAACCTAAATACAATCACTTTTATTTACCCCCCTTCTTTTAT
TTCTATCACACCTTTGATTTCGGCCCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_a16.g1 MSMg01no366_a16.g1 CHROMAT_FILE:
MSMg01no366_a16.g1 PHD_FILE: MSMg01no366_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:45 2005
         (389 letters)



>mm_chr15_78688145_78688933
          Length = 789

 Score =  708 bits (366), Expect = 0.0
 Identities = 383/389 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtcttcagctgagcacagtggtgcagatctgttagtctaggcttgagaggatcaaga 60
           |||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct: 201 attgtcttcagccgagcacagtggtgccgacctgttagcctaggcttgagaggatcaaga 260

                                                                       
Query: 61  gttcaaagtcatctttggctacatggtagatggaggccagcctgggctgctggagactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcaaagtcatctttggctacatggtagatggaggccagcctgggctgctggagactta 320

                                                                       
Query: 121 atgtcagaaaaataaatgccactgggtcacatggtgaggcttggccttgaagagacaatt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 atgtcagaaaaataaatgccactgggtcacatggtgaggctcggccttgaagagacaatt 380

                                                                       
Query: 181 aggccacctaatcacctagtagatcaatgccagaatgggctcctaataaaagcatgggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggccacctaatcacctagtagatcaatgccagaatgggctcctaataaaagcatgggct 440

                                                                       
Query: 241 gggcccaacttcccccctgcctgccatatgtcctcttgttctcagctatgacacagcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcccaacttcccccctgcctgccatatgtcctcttgttctcagctatgacacagcaca 500

                                                                       
Query: 301 aggaccctagcctggtgcggtggcacggtggcatcctcatggacttcctagcctctgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaccctagcctggtgcggtggcacggtggcatcctcatggacttcctagcctctgggt 560

                                        
Query: 361 cacagagagnaaacatctcttgttaatac 389
           ||||||||| |||||||||||||||||||
Sbjct: 561 cacagagagtaaacatctcttgttaatac 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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