BAC Information

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BAC

Clone NameMSMg01-366K07
Chromosome15 (Build37)
Map Location 16,506,090 - 16,670,986
singlet/doubletdoublet
Overlap geneLOC100040119
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneCdh9
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366K07.T7 (MSMg01no366_k07.b1)MSMg01-366K07.TJ (MSMg01no366_k07.g1)
ACCAG474308AG474309
length779771
length of high quality
(start - end)		514 (77 - 590)505 (81 - 585)
definitionCHROMAT_FILE: MSMg01no366_k07.b1 PHD_FILE: MSMg01no366_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:33 2005CHROMAT_FILE: MSMg01no366_k07.g1 PHD_FILE: MSMg01no366_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,670,473 - 16,670,986)(16,506,090 - 16,506,594)
sequence
CTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAACGCATCTCAACCAGTTCTAATTAACATTAGCAAAAC
ATTTCTAATCAAAATAGTAATAGTATTAGTTATTTTTCCCCTCAGGATAT
TCTAAAATGATTGTAATGTTTAAAATCTCACACACAAATTTCATGAAGTG
TCAAGATATTAAAAAGCGGTCTGAAATTCACTCTTGACATATACAGCAAA
TTTCTCTCTTATAACTATGGTGTCTGACTGTGATGTTTTTCATGTCCTTG
TGGACAAAAAATAAGGCCAACCAATCTATATTCTTGCTTATTATATTTTG
AAAAGAAGCACGTTGTTTCTTCTGAAATCAGAAGGGAAATTACCTGGTGA
TTAAATGGACCAAATGAATTAGGGGTTACAAATAGACAGTCAATAAGCTA
ACATATTTACCTGTACTTTATTTGTTATCAGAGTAAAGCATATTAGAAAG
CATATATTAGGGAATCTCAAAATCAGAAGCAGTATAAAATGCTTTATAAT
TTTTTTGTTTCTGAAATTATAATTCTGCATCATCTTCCTACTTCCTTCTT
CTTTCTCCAATTCCTCCCATGTAAATGGCTTGTTATTGTTCCAAATTCAA
AACTTTTTCCTCCATTGTTTGTTATAAACAAAAATCTAACAGGTGGGGGG
TTATAATTCCCTATGGATTCTATTAACTCATTTCTCCCCCAATAATATTT
TATAAATGGAATTTGGTTACCAAAAAGCN

NNTTTCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACATGTAAGACATTTTTA
GAAATTGATTTTGTATACCCAATGATTCCTATCACTTACATATTTTTTCA
CATTTAAATATTATTTCCCGAATCTTTACTTTGAGTTGCAGTGCTTTCCA
CATTTATAGAGTATAAATTAAAATTGCCACTTATCTTTTGTATTATTTGT
TTCATACAACTTTATATCTATGAAAGGAACACATCTTTAAATTTTAAATG
GTTTCCTTTAAAAGAGAATGATGATTTTGACCTCTTTAAATAAGGTAATC
GGAAAGAGTATAGTTGCATACTCAAAAACCAGAGAGGCAGCTACCAGAAC
CAAATAAAAATAAATATACTGTCTGCATAACAGGCATACTTTTCAATGAA
GGCCAAATTGTTGTACAGTTAAAACACTGAATTCTAAAGGAGTACCAAAG
AGGTCACATTGCAAGTCATTTTGCATTTATGGCATACAGAAATAAAATTT
TAGTATTTGGAATATATCACCTCTCTTTAACTGCCCTCTAAGTGACAATC
CTTTCATCANTTTAAGTAGGCTTTCAGTATGAAATATAAAAAGTTCCATG
GTACTGATCCAGACAGAGAAAATTAGCTTTTAATTATTTTATTTCCAAGA
TAAAATTTAAACATTCTTGGCGGTTAAAAAAAGAAAATTGTTTTTCTTTT
TTTTACTTTTTCCCATAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_k07.b1 MSMg01no366_k07.b1 CHROMAT_FILE:
MSMg01no366_k07.b1 PHD_FILE: MSMg01no366_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:33 2005
         (514 letters)



>mm_chr15_16670273_16671186
          Length = 914

 Score =  986 bits (510), Expect = 0.0
 Identities = 513/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctaattaacattagcaaaacatttctaatcaaaatagtaatagtattagttatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agttctaattaacattagcaaaacatttctaatcaaaatagtaatagtattagttatttt 655

                                                                       
Query: 61  tcccctcaggatattctaaaatgattgtaatgtttaaaatctcacacacaaatttcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tcccctcaggatattctaaaatgattgtaatgtttaaaatctcacacacaaatttcatga 595

                                                                       
Query: 121 agtgtcaagatattaaaaagcggtctgaaattcactcttgacatatacagcaaatttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agtgtcaagatattaaaaagcggtctgaaattcactcttgacatatacagcaaatttctc 535

                                                                       
Query: 181 tcttataactatggtgtctgactgtgatgtttttcatgtccttgtggacaaaaaataagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcttataactatggtgtctgactgtgatgtttttcatgtccttgtggacaaaaaataagg 475

                                                                       
Query: 241 ccaaccaatctatattcttgcttattatattttgaaaagaagcacgttgtttcttctgaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccaaccaatctaaattcttgcttattatattttgaaaagaagcacgttgtttcttctgaa 415

                                                                       
Query: 301 atcagaagggaaattacctggtgattaaatggaccaaatgaattaggggttacaaataga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atcagaagggaaattacctggtgattaaatggaccaaatgaattaggggttacaaataga 355

                                                                       
Query: 361 cagtcaataagctaacatatttacctgtactttatttgttatcagagtaaagcatattag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagtcaataagctaacatatttacctgtactttatttgttatcagagtaaagcatattag 295

                                                                       
Query: 421 aaagcatatattagggaatctcaaaatcagaagcagtataaaatgctttataattttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaagcatatattagggaatctcaaaatcagaagcagtataaaatgctttataattttttt 235

                                             
Query: 481 gtttctgaaattataattctgcatcatcttccta 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gtttctgaaattataattctgcatcatcttccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_k07.g1 MSMg01no366_k07.g1 CHROMAT_FILE:
MSMg01no366_k07.g1 PHD_FILE: MSMg01no366_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:33 2005
         (505 letters)



>mm_chr15_16505890_16506794
          Length = 905

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacatgtaagacatttttagaaattgattttgtatacccaatgattcctatcacttaca 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacatttaagacatttttagaaattgattttgtatacccaatgattcctatcacttaca 260

                                                                       
Query: 61  tattttttcacatttaaatattatttcccgaatctttactttgagttgcagtgctttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tattttttcacatttaaatattatttcccgaatctttactttgagttgcagtgttttcca 320

                                                                       
Query: 121 catttatagagtataaattaaaattgccacttatcttttgtattatttgtttcatacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttatagagtataaattaaaattgccacttatcttttgtattatttgtttcatacaac 380

                                                                       
Query: 181 tttatatctatgaaaggaacacatctttaaattttaaatggtttcctttaaaagagaatg 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatatctatgaaaggaacgcatctttaaattttaaatggtttcctttaaaagagaatg 440

                                                                       
Query: 241 atgattttgacctctttaaataaggtaatcggaaagagtatagttgcatactcaaaaacc 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaagttgacctctttaaataaggtaatcggaaagagtatagttgcatactcaaaaacc 500

                                                                       
Query: 301 agagaggcagctaccagaaccaaataaaaataaatatactgtctgcataacaggcatact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagaggcagctaccagaaccaaataaaaataaatatactgtctgcataacaggcatact 560

                                                                       
Query: 361 tttcaatgaaggccaaattgttgtacagttaaaacactgaattctaaaggagtaccaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcaatgaaggccaaattgttgtacagttaaaacactgaattctaaaggagtaccaaag 620

                                                                       
Query: 421 aggtcacattgcaagtcattttgcatttatggcatacagaaataaaattttagtatttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtcacattgcaagtcattttgcatttatggcatacagaaataaaattttagtatttgg 680

                                    
Query: 481 aatatatcacctctctttaactgcc 505
           |||||||||||||||||||||||||
Sbjct: 681 aatatatcacctctctttaactgcc 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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